Table 1 Classification results for Fibroblasts and PC3 Cell Collection.
From: Estimation of three-dimensional chromatin morphology for nuclear classification and characterisation
Features | Fibroblast cell line | PC3 cell line | ||||||
|---|---|---|---|---|---|---|---|---|
AUC | F1 score | Precision | Recall | AUC | F1 score | Precision | Recall | |
3D SRP | \({\textbf{0.997}} \pm {\textbf{0.003}}\) | \({\textbf{0.99}} \pm {\textbf{0.02}}\) | \({\textbf{0.98}} \pm {\textbf{0.03}}\) | \({\textbf{0.998}} \pm {\textbf{0.002}}\) | \({\textbf{0.999}} \pm {\textbf{0.002}}\) | \({\textbf{0.98}} \pm {\textbf{0.02}}\) | \({\textbf{0.97}} \pm {\textbf{0.003}}\) | \({\textbf{0.98}} \pm {\textbf{0.03}}\) |
Pseudo 3D SRP | \(0.94 \pm 0.04\) | \(0.94 \pm 0.04\) | \(0.97 \pm 0.04\) | \(0.91 \pm 0.06\) | \(0.98 \pm 0.01\) | \(0.85 \pm 0.20\) | \(0.75 \pm 0.32\) | \(0.94 \pm 0.08\) |
3D LBP | \({\textbf{0.997}} \pm {\textbf{0.003}}\) | \({\textbf{0.99}} \pm {\textbf{0.02}}\) | \({\textbf{0.98}} \pm {\textbf{0.03}}\) | \({\textbf{0.996}} \pm {\textbf{0.001}}\) | \(0.994 \pm 0.004\) | \(0.97 \pm 0.03\) | \(0.97 \pm 0.04\) | \(0.97 \pm 0.04\) |
Pseudo 3D LBP | \(0.88 \pm 0.13\) | \(0.79 \pm 0.15\) | \(0.77 \pm 0.18\) | \(0.82 \pm 0.10\) | \(0.97 \pm 0.02\) | \(0.90 \pm 0.06\) | \(0.84 \pm 0.11\) | \(0.97 \pm 0.04\) |
3D SIFT | \(0.96 \pm 0.02\) | \(0.90 \pm 0.05\) | \(0.90 \pm 0.06\) | \(0.91 \pm 0.13\) | \(0.98 \pm 0.03\) | \(0.96 \pm 0.06\) | \(0.97 \pm 0.04\) | \(0.94 \pm 0.07\) |
Pseudo 3D SIFT | \(0.85 \pm 0.04\) | \(0.74 \pm 0.08\) | \(0.69 \pm 0.10\) | \(0.79 \pm 0.08\) | \(0.93 \pm 0.02\) | \(0.80 \pm 0.13\) | \(0.84 \pm 0.21\) | \(0.80 \pm 0.05\) |
3D RSurf | \(0.98 \pm 0.02\) | \(0.92 \pm 0.03\) | \(0.93 \pm 0.04\) | \(0.92 \pm 0.02\) | \(0.97 \pm 0.03\) | \(0.88 \pm 0.09\) | \(0.85 \pm 0.12\) | \(0.93 \pm 0.09\) |
Pseudo 3D RSurf | \(0.94 \pm 0.02\) | \(0.86 \pm 0.02\) | \(0.87 \pm 0.05\) | \(0.85 \pm 0.05\) | \(0.97 \pm 0.03\) | \(0.89 \pm 0.05\) | \(0.89 \pm 0.01\) | \(0.91 \pm 0.08\) |
FV-CNN | \(0.996 \pm 0.004\) | \(0.93 \pm 0.16\) | \(0.90 \pm 0.25\) | \(0.989 \pm 0.01\) | \(0.995 \pm 0.01\) | \(0.96 \pm 0.06\) | \(0.95 \pm 0.03\) | \(0.96 \pm 0.08\) |
C-FC | \(0.72 \pm 0.08\) | \(0.62 \pm 0.08\) | \(0.61 \pm 0.11\) | \(0.65 \pm 0.08\) | \(0.76 \pm 0.05\) | \(0.72 \pm 0.04\) | \(0.70 \pm 0.06\) | \(0.76 \pm 0.08\) |
