Table 1 Unassembled read data and treatment plant capacity.
Location | Treatment process | SampleID | Treatment plant capacity (MGD) | Illumina platform data (length, platform, sequencing facility) | # of Illumina reads | Total bp sequenced (Illumina) | Average length of raw nanopore reads | N50 | # of raw nanopore reads | Total base pairs sequenced (Nanopore) |
|---|---|---|---|---|---|---|---|---|---|---|
India | Influent | IND-In | 14 | HiSeq 2500, 2 × 100, VT BI | 12,961,380 | 2.59E + 09 | 1496 | 1973 | 8.33E + 05 | 1.25E + 09 |
Hong Kong | Influent | HKG-In | 66 | HiSeq 2500, 2 × 100, VT BI | 10,069,772 | 2.01E + 09 | 2278 | 3868 | 2.34E + 06 | 5.34E + 09 |
Sweden | Influent | SWE-In | 26 | HiSeq 2500, 2 × 100, VT BI | 11,973,421 | 2.39E + 09 | 4399 | 6292 | 5.47E + 05 | 2.41E + 09 |
Switzerland | Influent | CHE-In | 32.6 | HiSeq 2500, 2 × 100, VT BI | 15,577,543 | 3.12E + 09 | 4141 | 5950 | 7.59E + 05 | 3.14E + 09 |
USA | Influent | USA-In | 6 | HiSeq 2500, 2 × 100, VT BI | 13,534,261 | 2.71E + 09 | 1918 | 3211 | 7.19E + 05 | 1.38E + 09 |
India | Activated sludge | IND-AS | 14 | HiSeq 2500, 2 × 100, VT BI | 13,520,740 | 2.7E + 09 | 2834 | 4600 | 1.50E + 06 | 4.26E + 09 |
Hong Kong | Activated sludge | HKG-AS | 66 | NextSeq500, 2 × 75, Scripps | 8,124,534 | 1.22E + 09 | 2022 | 3389 | 3.00E + 06 | 6.07E + 09 |
Sweden | Activated sludge | SWE-AS | 26 | NextSeq500, 2 × 75, Scripps | 11,953,275 | 1.79E + 09 | 2364 | 3828 | 1.07E + 06 | 2.53E + 09 |
Switzerland | Activated sludge | CHE-AS | 32.6 | NextSeq500, 2 × 75, Scripps | 14,454,216 | 2.17E + 09 | 2896 | 4707 | 5.50E + 05 | 1.59E + 09 |
USA | Activated sludge | USA-AS | 6 | NextSeq500, 2 × 75, Scripps | 8,541,529 | 1.28E + 09 | 3714 | 5973 | 5.47E + 05 | 2.03E + 09 |
