Table 1 Statistics and summary of structure determination and refinement.

From: Inverse relation between structural flexibility and IgE reactivity of Cor a 1 hazelnut allergens

 

Cor a 1.0401

Cor a 1.0402

Cor a 1.0403

Cor a 1.0404

PDB ID

6Y3H

6Y3I

6Y3K

6Y3L

Experimental restraints

Total no. of NOE-based distance restraintsa

5027

4062

4396

2662

Intraresidue [i = j]

1577

1232

1630

1175

Sequential [|i − j|= 1]

1200

1133

1068

669

Medium range [1 <|i − j|< 5]

900

771

701

327

Long range [|i − j|≥ 5]

1350

926

997

491

Dihedral angle restraints

267

260

257

255

Hydrogen bond restraints

142

148

140

149

Total no. of restraints

5436

4470

4793

3066

Total no. of restraints per residue

34.0

27.9

30.0

19.2

Long range restraints per residue

8.4

5.8

6.2

3.1

Restraint violationsb

Average distance violation

0.032 ± 0.024 Å

0.015 ± 0.014 Å

0.017 ± 0.010 Å

0.020 ± 0.017 Å

Maximal distance violationc

0.17 Å

0.092 Å

0.045 Å

0.15 Å

Average dihedral angel violation

0.39 ± 0.90°

0.19 ± 0.17°

0.46 ± 1.00°

0.16 ± 0.15°

Maximal dihedral angle violationc

14.10°

0.77°

15.7°

0.73°

RMSD valuesd

Backbone atoms

0.4 Å

0.4 Å

0.4 Å

0.4 Å

Heavy atoms

0.7 Å

0.5 Å

0.5 Å

0.5 Å

Bond lengths

0.013 Å

0.013 Å

0.013 Å

0.013 Å

Bond angles

2.4°

2.0°

2.1°

2.1°

Ramachandran plot statisticse

Most favored regions

88.3%

96.2%

93.3%

96.2%

Allowed regions

11.7%

3.0%

6.7%

3.3%

Disallowed regions

0.0%

0.7%

0.0%

0.5%

All-atom clashscoref

3

0

0

0

  1. aNumbers are given for all residues (Gly1–Cys160). bCalculated for all residues as sum over r−6. cLargest violation among the 20 lowest energy structures. dPairwise RMSD was calculated among the 20 lowest energy structures. eObtained with the protein structure validation software (PSVS) suite61. fAll-atom clashscore, defined as number of overlaps (≥ 0.4 Å) per 1000 atoms.