Table 1 Statistics and summary of structure determination and refinement.
From: Inverse relation between structural flexibility and IgE reactivity of Cor a 1 hazelnut allergens
Cor a 1.0401 | Cor a 1.0402 | Cor a 1.0403 | Cor a 1.0404 | |
---|---|---|---|---|
PDB ID | 6Y3H | 6Y3I | 6Y3K | 6Y3L |
Experimental restraints | ||||
Total no. of NOE-based distance restraintsa | 5027 | 4062 | 4396 | 2662 |
Intraresidue [i = j] | 1577 | 1232 | 1630 | 1175 |
Sequential [|i − j|= 1] | 1200 | 1133 | 1068 | 669 |
Medium range [1 <|i − j|< 5] | 900 | 771 | 701 | 327 |
Long range [|i − j|≥ 5] | 1350 | 926 | 997 | 491 |
Dihedral angle restraints | 267 | 260 | 257 | 255 |
Hydrogen bond restraints | 142 | 148 | 140 | 149 |
Total no. of restraints | 5436 | 4470 | 4793 | 3066 |
Total no. of restraints per residue | 34.0 | 27.9 | 30.0 | 19.2 |
Long range restraints per residue | 8.4 | 5.8 | 6.2 | 3.1 |
Restraint violationsb | ||||
Average distance violation | 0.032 ± 0.024 Å | 0.015 ± 0.014 Å | 0.017 ± 0.010 Å | 0.020 ± 0.017 Å |
Maximal distance violationc | 0.17 Å | 0.092 Å | 0.045 Å | 0.15 Å |
Average dihedral angel violation | 0.39 ± 0.90° | 0.19 ± 0.17° | 0.46 ± 1.00° | 0.16 ± 0.15° |
Maximal dihedral angle violationc | 14.10° | 0.77° | 15.7° | 0.73° |
RMSD valuesd | ||||
Backbone atoms | 0.4 Å | 0.4 Å | 0.4 Å | 0.4 Å |
Heavy atoms | 0.7 Å | 0.5 Å | 0.5 Å | 0.5 Å |
Bond lengths | 0.013 Å | 0.013 Å | 0.013 Å | 0.013 Å |
Bond angles | 2.4° | 2.0° | 2.1° | 2.1° |
Ramachandran plot statisticse | ||||
Most favored regions | 88.3% | 96.2% | 93.3% | 96.2% |
Allowed regions | 11.7% | 3.0% | 6.7% | 3.3% |
Disallowed regions | 0.0% | 0.7% | 0.0% | 0.5% |
All-atom clashscoref | 3 | 0 | 0 | 0 |