Table 1 The list of virus-host reads detected in FLK-BLV cell line.

From: A target enrichment high throughput sequencing system for characterization of BLV whole genome sequence, integration sites, clonality and host SNP

IS

Chromosome

Host-left

Host-right

Reads.total

Strand

Gene located within 1000bp

Within repetitive sequence

5'end

3'end

Number of reads

5'end

3'end

Number of reads

Gene name

Intron/Exon

Region

IS1

chr1

245,437,082

245,437,600

434

245,437,586

245,437,988

355

753

–

–

–

–

IS2

chr2

9,798,618

9,799,109

761

9,799,100

9,799,546

568

1329

–

–

–

–

IS3

chr9

25,557,188

25,557,359

88

25,557,159

25,557,389

92

180

–

MYC

UTR

CpG Island

  1. IS ID of each integration site, host-left host-right; nucleotide position of virus-host chimeric reads as shown in Fig. 2A, number of reads the number of virus-host chimeric reads around each IS strand, direction of BLV genome to the host genome.
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