Figure 2 | Scientific Reports

Figure 2

From: Short and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma

Figure 2

Large (> 10 kb), somatic structural variant calls obtained via different methods. (A) Venn diagrams showing overlap between calls obtained from Illumina short-read data (I; ochre), Nanopore long-read data mapped with minimap2 (M; turquoise) and Nanopore long-read data mapped with ngmlr (N; blue). Bold, black numbers represent true positive calls, while italic, dark red numbers represent false positive calls. (B) Data as above for (A), but shown as total counts for each method in a bar chart. Calls are grouped into deletions (DEL), duplications (DUP), inversions (INV) and translocations (TRA). True positive (TP) calls are shown in green and false positive (FP) calls are shown in red-brown.

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