Table 3 Virus results per virus family.
From: The virome of German bats: comparing virus discovery approaches
Virus/Acc No of best match | # | Species | Reads | Longest contig | ID nt/aa % | |
|---|---|---|---|---|---|---|
Parvoviridae | Blatella Germanica densovirus-like 1 | 1 | Myotis myotis | 116,884 | 3727 nt | 97.0/98.0 |
JQ320376.1 | Pipistrellus kuhlii | 98.5% genome | ||||
Myotis nattereri | ||||||
Blatella Germanica densovirus-like 2 | 3 | Eptesicus nilssonii | 5869 | 614 nt | 98.0/99.0 | |
KU727766.1 | ||||||
Blatella Germanica densovirus-like 3 | 9 | Myotis daubentonii | 2222 | 983 nt | 99.0/99.0 | |
JQ320376.1 | Vespertilio murinus | |||||
Parus major densovirus-like | 3 | Eptesicus nilssonii | 1042 | 1,568 nt | 98.0/95.0 | |
KU727766 | 67.6% genome | |||||
Bat Bufavirus | 2 | Nyctalus noctula | 20,296 | 722 nt | 88.0/92.0 | |
Bat parvovirus isolate BtNv-PV | 40.5% genome | |||||
KJ641683 | ||||||
Picornaviridae | King virus UWV1-like | 1 | Myotis myotis | 13,618 | 2355 nt | 99.0/99.0 |
KX779453 | Pipistrellus kuhlii | 40.3% genome | ||||
Myotis nattereri | ||||||
King virus UWV 2-like | 3 | Eptesicus nilssonii | 53,150 | 6010 nt | 97.0/99.0 | |
KX779454.1 | 1022 | 100% genome | ||||
King virus UWV 2-like 2 | 5 | Pipistrellus pipistrellus | 919,330 | 2,438 nt | 98.0/99.0 | |
KX779453.1 | ||||||
King virus UWV 2-like 3 | 8 | Plecotus auritus | 11,400 | 971 nt | 97.0/98.0 | |
KX779453.1 | Pipistrellus nathusii | |||||
Tetnovirus 1-like | 2 | Nyctalus noctula | 22,231 | 710 nt | 70.0/78.0 | |
HM480375 | 4 | Myotis mystacinus | 2507 | 46.7% genome | ||
Hubei picorna-like virus | 8 | Plecotus auritus | 14,046 | 481 nt | 66.0 /59.0 | |
KX883698.1 | Pipistrellus nathusii | 4.01% genome | ||||
King virus UWV 2-like 4 | 7 | Eptesicus serotinus | 2075 | 1523 nt | 98.80% | |
Totiviridae | Eimeria Tenella RNA virus 1-like | 2 | Nyctalus noctula | 881,349 | 2059 nt | –/50.0 |
KJ363185 | 81.3% genome | |||||
Mononegavirus | Wenzhou tapeworm virus 1-like | 2 | Nyctalus noctula | 14,628 | 627 nt | –/35.0 |
KX884436 | 4% genome | |||||
Reovirus | Irlbach Bat Orbivirus | 2 | Nyctalus noctula | 4323 | 783 nt | 70.69/81.0 |
MH144554.1 (Bat Orbivirus China) | 4% genome | |||||
Hannover bat rotavirus | 5 | Pipistrellus pipistrellus | 135 | 424 nt | 58.0/57.0 | |
GQ398017 (Human Rotavirus A) | ||||||
Bat Orthoreovirus T3/Bat/Germany/324/08 | 8 | Pipistrellus nathusii | 92,703 | 1296 nt | 100/100 | |
JQ412758 | Plecotus auritus | 90% genome | ||||
Bunyavirus | Issyk-Kul virus strain PbGER | 3 | Eptesicus nilssonii | 5,580 | 1281 nt | 95.0/99.0 |
KR709221.1 Issyk-Kul virus | 93.5% segment | |||||
Zwiesel bat banyangvirus | 3 | Eptesicus nilssonii | 3,635 | 2,578 nt | 70.0/72.0 | |
KF186495.1 Malsoor virus, SFTS | 90.0% genome | |||||
Berlin bat nairovirus | 5 | Pipistrellus pipistrellus | 153 | 384 nt | 69/58 | |
KU925485 Sapphire II-like virus | ||||||
Bavarian bat lalavirus | 8 | Pipistrellus nathusii | 131 | 176 nt | –/50.0 | |
NC-043671 Laurel Lake virus-like 1 | Plecotus auritus | |||||
Wittenau bat nairovirus | 6 | Pipistrellus pipistrellus | 9 | 377 nt | 72 / 50 | |
KU925443 Avalon Bres virus | Pipistrellus pygmaeus | |||||
Munich bat lalavirus | 8 | Pipistrellus nathusii | 4295 | 528 nt | –/43.0 | |
NC_043679.1 Laurel Lake-like virus 2 | Plecotus auritus | |||||
Tymovirus | Bombyx mori latent virus | 3 | Eptesicus nilssonii | 380 | 1179 nt | –/50.0 |
NC038331 | ||||||
Grapevine Red Globe virus isolate | 5 | Pipistrellus pipistrellus | 43 | 320 nt | 76.0/78.0 | |
KX109927.1 | ||||||
Retroviridae | Myotis myotis endogenous retrovirus | 1 | Myotis myotis | 134 | 664 nt | |
XM_014547948 Myotis brandtii ERV | Pipistrellus kuhlii | 97.0/93.0 | ||||
Myotis nattereri | ||||||
Pipistrellus pipistrellus endogenous Retrovirus XP_014403434 FERV1-like | 6 | Pipistrellus pipistrellus | 36 | 558 nt | 97.0/93.0 | |
Myotis daubentonii endogenous retrovirus XR_001346663.2 Myotis lucifugus endogenous retrovirus-like | 9 | Myotis daubentonii Vespertilio murinus | 64 | 279 nt | 95.0/90.2 |
