Table 2 Top gene ontology category in each cluster, and notable genes found in the cluster.

From: DNMT3.1 controls trade-offs between growth, reproduction, and life span under starved conditions in Daphnia magna

Cluster

Gene ontology (GO) term enrichment

Notable genes

Differential expression (MTvsWT)

Top GO biological process category

FDR P-value

FC

FDR P-value

A

Mitotic cell cycle

9.94E−17

ftz-f1 (Dapma7bEVm011018t1)

2.53

4.28E-10

B

Transmembrane transport

3.83E−07

INDY (Dapma7bEVm010715t1)

41.17

0

C

Proteolysis

1.79E−13

Vtg1 (Dapma7bEVm024402t1)

− 2.45

6.74E−09

D

Carbohydrate metabolic process

6.39E−17

tobi (Dapma7bEVm003111t1)

− 2.26

1.24E−05

E

Proteolysis

2.38E−09

epsilonTry (Dapma7bEVm010425t1)

− 3.22

4.22E−06

  1. MT: DNMT3.1−/− mutant; WT: Wild type; FDR: False discovery rate; FC: Fold change expression between mutant and wild type under starved condition.
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