Table 2 Statistics and BUSCO scores for RPW and Tribolium annotation gene sets.
| Â | RPW pseudo-haplotype1 BRAKER | RPW isoseq3 | RPW M_v.1 Funannotate | RPW M_pseudochr BRAKER | Tribolium v5.2 |
|---|---|---|---|---|---|
Transcript (#) | 25,382 | 24,009 | 25,394 | 36,491 | 25,229 |
Loci (#) | 23,413 | 6,222 | 25,394 | 33,422 | 14,244 |
BUSCO (%)—all isoforms | |||||
Complete | 91.8 | 62.5 | 68.9 | 88.8 | 95.6 |
   Single-copy | 82.0 | 29.8 | 21.1 | 9.6 | 76.2 |
   Duplicated | 9.8 | 32.7 | 47.8 | 79.2 | 19.4 |
Fragmented | 2.2 | 1.6 | 10.5 | 2.2 | 0.3 |
Missing | 6.0 | 35.9 | 20.6 | 9.0 | 4.1 |
BUSCO (%)—one isoform per locus | |||||
Complete | 91.2 | 60.1 | 68.9 | 88.3 | 91.6 |
   Single-copy | 89.2 | 59.7 | 21.1 | 10.9 | 91.1 |
   Duplicated | 2.0 | 0.4 | 47.8 | 77.4 | 0.5 |
Fragmented | 2.2 | 2.6 | 10.5 | 2.2 | 0.5 |
Missing | 6.6 | 37.3 | 20.6 | 9.5 | 7.9 |
