Table 3 Characterization of MQTL.
MQTL | Peak | N QTL | Traits | CI left (cM) | CI right (cM) | Left closest marker | Position (bp) | Right closest marker | Position (bp) |
|---|---|---|---|---|---|---|---|---|---|
durumMQTL1A.1 | 3.5 | 3 | FHB, YPC, GPC | 2.1 | 5.0 | BS00064204_51 | 3,574,024 | wsnp_Ex_c2868_5293485 | 7,130,925 |
durumMQTL1A.2 | 46.1 | 4 | LR, SR, CC, YPC | 41.2 | 50.9 | RAC875_c17283_453 | 48,029,342 | Tdurum_contig48416_335 | 362,986,005 |
durumMQTL1A.3 | 92.7 | 2 | AX, SV | 90.1 | 95.4 | RAC875_c16149_298 | 509,524,234 | wsnp_Ex_c3258_6004611 | 521,653,795 |
durumMQTL1A.4 | 142.0 | 2 | LR, YPC | 139.3 | 144.6 | wsnp_Ex_c3201_5910659 | 571,925,048 | CAP12_rep_c5332_341 | 576,427,845 |
durumMQTL1B.1 | 16.9 | 4 | RRT | 16.5 | 17.4 | wPt-5006 | 16,362,423 | wPt-0655 | 17,484,592 |
durumMQTL1B.2 | 29.3 | 2 | LR, YPC | 28.2 | 30.5 | TA002065-1430 | 52,576,257 | Kukri_c5861_360 | 65,241,426 |
durumMQTL1B.3 | 55.3 | 10 | FHB, YPC, RRT, GPC, CL, AX, SV | 52.9 | 57.8 | BS00069723_51 | 449,298,414 | RAC875_c92464_53 | 478,463,076 |
durumMQTL1B.4 | 95.3 | 2 | RRT, GPC | 92.5 | 98.1 | wsnp_Ex_rep_c71376_70138381 | 585,368,279 | BS00064162_51 | 594,840,328 |
durumMQTL1B.5 | 117.6 | 5 | GseC, FHB, YPC, GPC | 116.2 | 119.0 | Kukri_rep_c97349_140 | 626,782,208 | BS00089790_51 | 633,135,607 |
durumMQTL1B.6 | 151.3 | 2 | GseY, YPC | 149.8 | 152.7 | D_GBUVHFX01AHO3C_336 | 661,200,398 | IAAV6011 | 664,610,714 |
durumMQTL2A.1 | 8.2 | 4 | FHB, SBCMV, BG, RRT | 4.9 | 11.6 | RFL_Contig4030_493 | 4,105,954 | D_contig79877_194 | 10,965,955 |
durumMQTL2A.2 | 39 | 4 | LR, BG, FHB, NDVI | 36.1 | 42.3 | Kukri_c27040_309 | 29,530,680 | Ku_c23118_149 | 34,130,605 |
durumMQTL2A.3 | 50.84 | 3 | NDVI, GPC, SPAD | 48.8 | 52.9 | Tdurum_contig32692_271 | 38,336,059 | Tdurum_contig46797_585 | 43,936,608 |
durumMQTL2A.4 | 104.6 | 6 | YPC, SR, NDVI | 103.1 | 106.1 | gwm95 | 156,761,990 | Kukri_c52614_291 | 192,760,487 |
durumMQTL2A.5 | 126.1 | 4 | FLRI, YPC, GZnC | 123.6 | 128.5 | Tdurum_contig42540_843 | 603,597,766 | Tdurum_contig101781_53 | 608,746,813 |
durumMQTL2A.6 | 135.2 | 4 | GPC, GZnC, LR, YPC, GFeC | 133.5 | 136.9 | BobWhite_c34273_67 | 644,481,819 | wsnp_JD_c514_781859 | 671,466,946 |
durumMQTL2B.1 | 10.8 | 5 | RRT, SBCMV, BG, SPAD, NVDI | 10.4 | 11.2 | BS00081871_51 | 11,131,675 | BS00085748_51 | 9,712,138 |
durumMQTL2B.2 | 59.0 | 2 | GseY, GPC | 55.4 | 62.7 | Tdurum_contig74936_133 | 79,053,860 | Tdurum_contig59780_988 | 99,231,827 |
durumMQTL2B.3 | 91.0 | 2 | NDVI, BG | 87.5 | 94.6 | RAC875_c5080_915 | 201,176,819 | RFL_Contig3353_125 | 404,189,154 |
durumMQTL2B.4 | 102.9 | 2 | LR, GFeC | 100.5 | 105.3 | Ra_c106383_270 | 446,141,376 | RAC875_c992_370 | 493,056,835 |
durumMQTL2B.5 | 115.0 | 3 | GFeC, SV, YPC | 112.0 | 118.0 | Excalibur_c84741_99 | 537,614,290 | wsnp_Ex_c114_229879 | 570,335,910 |
durumMQTL2B.6 | 126.7 | 4 | RRT, GPC, NDVI, LR | 124.4 | 128.9 | GENE-1352_214 | 603,649,910 | IAAV5675 | 633,838,200 |
durumMQTL2B.7 | 147.5 | 11 | GseY, LR, FLRI, RRT, GFeC | 145.8 | 149.1 | BobWhite_c27184_148 | 697,868,929 | Tdurum_contig17826_338 | 714,626,523 |
durumMQTL2B.8 | 183.3 | 5 | NDVI, SPAD, PDL, PM | 183.2 | 183.5 | BS00065302_51 | 778,068,615 | BS00083998_51 | 778,539,953 |
durumMQTL3A.1 | 61.8 | 5 | FHB, DB, NDVI, SBCMV | 58.4 | 65.1 | Tdurum_contig43850_140 | 117,216,598 | BS00063531_51 | 282,116,044 |
durumMQTL3A.2 | 83.7 | 4 | LR, PDL, GFeC, STB | 80.4 | 87.1 | Tdurum_contig59531_914 | 532,975,275 | wsnp_Ku_c5378_9559013 | 560,465,228 |
durumMQTL3A.3 | 123.5 | 2 | GSeC, AX | 117.7 | 129.4 | Kukri_c25064_120 | 649,262,262 | RAC875_c22641_993 | 739,903,219 |
durumMQTL3A.4 | 150.2 | 5 | RRT | 148.9 | 151.6 | Tdurum_contig42495_389 | 705,563,307 | wsnp_Ex_c9377_15572157 | 707,002,492 |
durumMQTL3B.1 | 6.3 | 7 | SPAD, NDVI, RRT, LR, PDL | 5.5 | 7.2 | Kukri_rep_c88385_226 | 6,221,552 | wsnp_Ex_c40595_47620787 | 6,886,922 |
durumMQTL3B.2 | 45.7 | 2 | FHB | 42.7 | 48.8 | BobWhite_c62702_587 | 54,867,872 | GENE-1900_115 | 67,253,287 |
durumMQTL3B.3 | 67.0 | 2 | SBCMV, YPC | 63.9 | 70.1 | RFL_Contig3857_548 | 133,186,432 | RAC875_c79844_323 | 167,491,237 |
durumMQTL3B.4 | 91.7 | 5 | SR, SV | 89.2 | 94.2 | BobWhite_rep_c61884_158 | 516,937,853 | Kukri_c15521_2027 | 553,129,195 |
durumMQTL3B.5 | 159.9 | 5 | RRT, YR, CL, RRT | 157.7 | 162.1 | BS00063624_51 | 772,236,110 | Kukri_c3243_1016 | 776,834,461 |
durumMQTL3B.6 | 196.6 | 3 | YPC | 195.2 | 198.1 | RAC875_c111148_585 | 817,039,063 | wsnp_BE444579B_Ta_2_2 | 818,195,973 |
durumMQTL4A.1 | 44.0 | 3 | GPC, CIR, LR | 40.3 | 47.7 | IACX62 | 46,560,597 | wsnp_Ex_c30989_39836034 | 88,066,155 |
durumMQTL4A.2 | 71.6 | 2 | LR, GCuC | 67.8 | 75.4 | wsnp_BF484585A_Td_2_1 | 572,071,933 | TA005643-0627 | 583,594,297 |
durumMQTL4A.3 | 92.7 | 5 | GPC, YPC, GCuC | 90.2 | 95.2 | Ku_c6779_1381 | 604,660,434 | Tdurum_contig61343_177 | 608,153,268 |
durumMQTL4A.4 | 112.4 | 2 | SR, GCuC | 108.7 | 116.1 | wsnp_Ex_c41313_48161689 | 622,734,003 | BobWhite_c10610_149 | 635,190,258 |
durumMQTL4A.5 | 154.5 | 3 | SR, CC | 151.2 | 157.9 | Kukri_c13761_379 | 702,329,076 | wPt-9196 | 707,410,962 |
durumMQTL4B.1 | 11.6 | 2 | RRT, CL | 10.5 | 12.6 | Tdurum_contig29961_68 | 11,083,105 | wsnp_Ex_c10347_16946522 | 12,042,854 |
durumMQTL4B.2 | 17.1 | 4 | RRT, CL | 15.5 | 18.7 | GENE-4933_489 | 13,403,076 | Tdurum_contig68677_480 | 18,074,456 |
durumMQTL4B.3 | 21.7 | 3 | FHB, RRT | 20.7 | 22.7 | Kukri_c34633_69 | 20,795,117 | BS00022431_51 | 23,204,984 |
durumMQTL4B.4 | 30.3 | 2 | GPC, NDVI | 28.0 | 32.7 | Tdurum_contig75738_113 | 26,056,520 | IACX47 | 30,112,862 |
durumMQTL4B.5 | 54.6 | 6 | GMnC, GPC, AX, SV, GMnC | 51.5 | 57.8 | TA006298-0500 | 383,231,914 | wsnp_Ex_c16083_24512551 | 453,294,222 |
durumMQTL4B.6 | 64.4 | 3 | GCuC, RRT, GseY | 62.9 | 65.9 | Tdurum_contig24612_209 | 504,883,147 | Kukri_c322_1394 | 524,075,645 |
durumMQTL4B.7 | 82.8 | 2 | RRT | 81.0 | 84.6 | wsnp_Ex_c23638_32875196 | 607,834,125 | RAC875_c14455_1148 | 621,516,171 |
durumMQTL4B.8 | 98.14 | 6 | YPC, GCuC, RRT | 95.8 | 100.5 | Tdurum_contig8322_966 | 646,421,893 | wsnp_Ex_c14138_22066009 | 652,716,927 |
durumMQTL5A.1 | 48.6 | 3 | YPC, RRT | 47.1 | 50.0 | D_GA8KES402GAVSF_317 | 111,907,960 | Kukri_c25407_645 | 331,277,629 |
durumMQTL5A.2 | 61.6 | 4 | GseC, YPC, AX | 58.6 | 64.6 | Tdurum_contig5481_369 | 395,919,866 | BS00022110_51 | 401,330,652 |
durumMQTL5A.3 | 96.1 | 2 | SBCMV, SR | 89.1 | 103.1 | wsnp_BE443745A_Ta_2_1 | 439,542,927 | BobWhite_rep_c50888_306 | 468,004,808 |
durumMQTL5A.4 | 131.1 | 3 | GCaC, CIR, RRT | 128.7 | 133.5 | CAP7_c4800_276 | 527,044,675 | Tdurum_contig60421_74 | 529,441,492 |
durumMQTL5A.5 | 143.2 | 3 | GseY, OP, GPC | 139.9 | 146.6 | BobWhite_c40643_370 | 537,480,079 | Excalibur_c26671_57 | 553,019,889 |
durumMQTL5A.6 | 175.6 | 3 | FHB | 174.9 | 176.3 | Excalibur_c4083_874 | 607,909,980 | Ku_c24141_700 | 610,522,247 |
durumMQTL5B.1 | 9.9 | 2 | NDVI, SPAD | 5.9 | 13.8 | wsnp_Ku_c10586_17464696 | 9,787,752 | Tdurum_contig92396_380 | 17,218,406 |
durumMQTL5B.2 | 42.0 | 3 | GPC, CP, FHB | 40.3 | 43.8 | Excalibur_c57167_475 | 84,059,870 | Excalibur_c15262_2304 | 327,019,780 |
durumMQTL5B.3 | 69.3 | 2 | Fb | 64.4 | 74.2 | Tdurum_contig28754_218 | 439,553,088 | Kukri_c10296_1512 | 475,596,832 |
durumMQTL5B.4 | 87.1 | 4 | FLRI, PM, GCaC, SR | 81.5 | 92.7 | GENE-3437_68 | 489,178,563 | Tdurum_contig53926_455 | 514,395,841 |
durumMQTL5B.5 | 122.2 | 3 | GCaC, GPC, YPC | 118.0 | 126.4 | wsnp_Ex_c13485_21225504 | 559,774,294 | wsnp_Ra_c39562_47242455 | 576,849,094 |
durumMQTL5B.6 | 139.0 | 3 | GMgC, CC, GCaC | 135.0 | 143.1 | Excalibur_rep_c88310_1394 | 588,418,255 | RFL_Contig3835_475 | 604,697,415 |
durumMQTL5B.7 | 159.3 | 5 | YPC, CIR, OP | 157.8 | 160.8 | Tdurum_contig56335_223 | 643,149,387 | IACX3775 | 649,698,450 |
durumMQTL6A.1 | 2.3 | 2 | NDVI | 0.0 | 4.9 | BobWhite_c43135_397 | 1,819,265 | Tdurum_contig41990_1324 | 7,436,293 |
durumMQTL6A.2 | 53.7 | 6 | YPC, CL, LR, RRT, SR | 52.4 | 55.0 | Excalibur_c33110_52 | 323,649,274 | wsnp_Ex_c35545_43677480 | 443,168,317 |
durumMQTL6A.3 | 81.3 | 6 | YPC, SV, CIR | 79.6 | 83.1 | BS00023893_51 | 552,510,396 | BS00065082_51 | 553,838,425 |
durumMQTL6A.4 | 123.6 | 6 | RRT, NDVI, AX | 123.4 | 123.8 | BobWhite_c24258_496 | 602,232,048 | RAC875_c27781_591 | 602,503,159 |
durumMQTL6B.1 | 18.1 | 5 | GKC, RRT, YPC, GKC | 15.8 | 20.3 | Excalibur_c72517_251 | 13,113,351 | Kukri_rep_c103034_636 | 17,165,695 |
durumMQTL6B.2 | 61.0 | 5 | GKC, OP, FHB, NDVI | 56.8 | 65.3 | Tdurum_contig48689_514 | 126,247,427 | BS00073879_51 | 146,626,621 |
durumMQTL6B.3 | 77.5 | 5 | RRT, GKC, YPC, FHB, RRT | 76.0 | 78.9 | IACX4889 | 442,381,268 | BS00089580_51 | 454,883,952 |
durumMQTL6B.4 | 90.8 | 2 | RRT | 86.9 | 94.7 | wsnp_JG_c1834_901723 | 537,655,953 | Tdurum_contig44825_307 | 588,937,432 |
durumMQTL6B.5 | 104.7 | 2 | LS, NDVI | 103.4 | 105.9 | TA004372-0730 | 621,526,724 | BS00011523_51 | 633,371,119 |
durumMQTL6B.6 | 127.2 | 3 | PGC | 126.5 | 128.0 | BS00109717_51 | 662,889,085 | Tdurum_contig45914_283 | 663,681,523 |
durumMQTL7A.1 | 61.6 | 5 | LR, SPAD, PDL, NDVI | 60.4 | 62.7 | Tdurum_contig31137_373 | 61,412,931 | RAC875_c10701_435 | 65,969,594 |
durumMQTL7A.2 | 102.3 | 2 | FHB, YPC | 98.3 | 106.3 | BobWhite_c48548_106 | 131,332,420 | Tdurum_contig51089_1066 | 163,557,572 |
durumMQTL7A.3 | 114.7 | 2 | RRT | 109.1 | 120.3 | RFL_Contig5676_748 | 200,976,557 | BS00069163_51 | 511,685,823 |
durumMQTL7A.4 | 145.4 | 4 | YPC, Fb, SR, RRT | 142.8 | 147.9 | BS00044234_51 | 631,404,872 | BS00022202_51 | 641,161,271 |
durumMQTL7A.5 | 175.7 | 3 | YPC, PGC | 173.7 | 177.7 | wPt-5558 | 682,897,955 | Tdurum_contig31699_276 | 691,003,050 |
durumMQTL7A.6 | 179.6 | 2 | AX, YPC | 179.5 | 179.8 | Tdurum_contig31699_276 | 691,003,050 | Tdurum_contig31699_276 | 691,003,050 |
durumMQTL7B.1 | 2.3 | 5 | RRT, GPC, FHB | 0.1 | 4.6 | Ex_c21249_1111 | 886,966 | Tdurum_contig49737_462 | 5,096,321 |
durumMQTL7B.2 | 29.7 | 4 | FHB, CIR, GseY | 27.6 | 31.9 | RAC875_c10672_440 | 87,960,765 | wsnp_Ex_c36325_44308589 | 53,938,632 |
durumMQTL7B.3 | 52.9 | 4 | RRT, YPC | 51.5 | 54.3 | BS00000170_51 | 103,606,730 | Excalibur_c1694_899 | 105,323,515 |
durumMQTL7B.4 | 75.4 | 2 | GseC, Fb | 72.7 | 78.1 | Kukri_c9353_642 | 255,076,815 | RAC875_c22594_125 | 388,539,117 |
durumMQTL7B.5 | 89.2 | 2 | GSC, AX | 84.8 | 93.6 | CAP8_c949_312 | 437,505,136 | Kukri_rep_c71356_236 | 512,177,803 |
durumMQTL7B.6 | 116.4 | 3 | LR, YPC, YR | 113.8 | 119.0 | RAC875_c18043_411 | 578,959,591 | Excalibur_c58742_144 | 593,689,787 |
durumMQTL7B.7 | 137.0 | 3 | GSeC, SR | 134.9 | 139.2 | wsnp_Ex_c10307_16890310 | 630,702,498 | Kukri_c31628_571 | 641,717,556 |
durumMQTL7B.8 | 172.8 | 3 | YPC, RRT | 170.7 | 174.8 | wsnp_Ex_rep_c101269_86663549 | 684,341,861 | wsnp_Ex_c2365_4431185 | 687,868,244 |
durumMQTL7B.9 | 206.53 | 7 | YPC, LR, Fb, SR, GPC | 206.5 | 206.6 | RAC875_rep_c106035_443 | 715,557,101 | Tdurum_contig28601_486 | 716,329,509 |
