Table 1 Number of animals analyzed after the four filters applied for the selection of the animals, number of sires in each subgroup, genotype rate and number of SNP used for ROH and DAPC analyses per each subgroup.

From: Genome-wide scan reveals genetic divergence in Italian Holstein cows bred within PDO cheese production chains

Parameter

Subgroups

AS

DM

GP

PR

TR

N. animal filter n.1

1188

2680

12,765

4787

712

N. animal filter n.2

1090

1669

8403

4456

577

N. animal filter n.3

475

842

1024

2647

337

N. animal filter n.4

200

200

200

200

200

Number of sires

116

115

137

130

99

Genotyping rate

0.98

0.99

0.98

0.99

0.99

N. SNP - ROH

310,263

310,263

310,263

310,263

310,263

N. SNP - DAPC

162,480

162,480

162,480

162,480

162,480

  1. AS = Asiago; DM = Drinkable Milk; GP = Grana Padano; PR = Parmigiano Reggiano; TR = Trentingrana.
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