Table 2 Description of raw sequencing, mapping and assembly data.
From: Genomic history of human monkey pox infections in the Central African Republic between 2001 and 2018
A1 | A2 | A4 | A5 | A6 | B1 | B2 | 015c | 018c | 038c | |
|---|---|---|---|---|---|---|---|---|---|---|
Total raw reads | 1,994,714 | 1,665,522 | 17,123,360 | 12,105,040 | 11,959,724 | 3,984,618 | 1,752,554 | 8,213,740 | 6,128,588 | 7,594,188 |
Mapped reads | 1,029,173 (51.6%) | 1,394,382 (83.7%) | 16,601,648 (96.9%) | 11,824,012 (98.3%) | 11,588,292 (97.7%) | 3,822,177 (95.9%) | 1,497,765 (85.4%) | 3,990,602 (48.6%) | 2,907,565 (47.4%) | 3,647,374 (48.1%) |
Average depth | 736.82X | 598.32X | 8714.24X | 6418.99X | 6545.91X | 1683.79X | 620.24X | 2613.04X | 1867.17X | 2309.89X |
