Table 1 GEO analysis results.
GEO accession number (number of samples) | Pathology (number of samples) | Gene name | SVA | Limma | ||
|---|---|---|---|---|---|---|
Effect size | FDR | Effect size | FDR | |||
GSE145467 (16) GSE45885 (30) GSE108886 (12) GSE14310 (4) | Unknown vs. norm_oa (8 vs. 19) | TXNDC2 | − 2.93896 | 1.14E−09 | − 4.24932 | 1.44E−15 |
PRM1 | − 5.20465 | 1.91E−10 | − 5.36864 | 1.99E−10 | ||
PRM2 | − 4.80788 | 2.12E−09 | − 5.15656 | 3.60E−10 | ||
TNP1 | − 5.89948 | 1.09E−11 | − 7.0504 | 6.48E−16 | ||
SCOS vs. norm_oa (7 vs. 19) | TXNDC2 | − 2.36736 | 7.16E−07 | − 2.42145 | 7.86E−07 | |
PRM1 | − 4.22982 | 1.59E−07 | − 4.28438 | 5.89E−07 | ||
PRM2 | − 3.97574 | 6.48E−07 | − 3.98456 | 1.77E−06 | ||
TNP1 | − 4.76556 | 1.86E−08 | − 4.75112 | 8.32E−09 | ||
Pre vs. norm_oa (5 vs. 19) | TXNDC2 | − 1.85791 | 0.000951 | − 2.01963 | 0.000557 | |
PRM1 | − 5.48043 | 3.84E−08 | − 5.71566 | 6.07E−08 | ||
PRM2 | − 5.08952 | 2.22E−07 | − 5.35397 | 1.81E−07 | ||
TNP1 | − 5.95316 | 1.25E−08 | − 5.94338 | 4.08E−09 | ||
Mei vs. norm_oa (12 vs. 19) | TXNDC2 | − 1.8668 | 1.12E−05 | − 1.98834 | 3.97E−06 | |
PRM1 | − 4.40475 | 3.15E−09 | − 4.54281 | 5.81E−09 | ||
PRM2 | − 4.25746 | 8.18E−09 | − 4.41748 | 7.07E−09 | ||
TNP1 | − 4.72509 | 1.13E−09 | − 4.78687 | 1.50E−10 | ||
Post vs. norm_oa (11 vs. 19) | TXNDC2 | − 0.64269 | 0.482129 | − 0.99323 | 0.113607 | |
PRM1 | − 0.67478 | 0.727302 | − 0.73242 | 0.669765 | ||
PRM2 | − 0.67873 | 0.725413 | − 0.95463 | 0.506082 | ||
TNP1 | − 0.9204 | 0.602481 | − 1.3407 | 0.227524 | ||
SCOS vs. norm_oa (7 vs. 7) | TXNDC8 | − 1.52593 | 4.46E−05 | − 1.59405 | 3.97E−05 | |
Pre vs. norm_oa (5 vs. 7) | − 1.71766 | 8.23E−05 | − 1.79352 | 8.63E−05 | ||
Mei vs. norm_oa (12 vs. 7) | − 1.48322 | 4.45E−05 | − 1.55205 | 4.53E−05 | ||
Post vs. norm_oa (11 vs. 7) | − 0.60822 | 0.2240309 | − 0.65034 | 0.21628 | ||
