Figure 1 | Scientific Reports

Figure 1

From: Phenotypic and genotypic features of the Mycobacterium tuberculosis lineage 1 subgroup in central Vietnam

Figure 1

Phylogenetic tree of 181 Da Nang strains (a) and 332 Hanoi strains (the northern Vietnam data set) (b), constructed using variants after mapping with H37Rv. Phylogenetic trees were constructed with the maximum likelihood method using RAxML version 8.2.8 (https://github.com/stamatak/standard-RAxML) and visualized with plotTree for python v2.7 (https://github.com/katholt/plotTree). Regions of difference (RDs), deletions, and SNVs in correlation with Mtb clades are depicted. Mtb Mycobacterium tuberculosis, SNV single nucleotide variant, Del deletion, aBJ ancient Beijing, mBJ modern Beijing, NA not available.

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