Figure 2 | Scientific Reports

Figure 2

From: Phenotypic and genotypic features of the Mycobacterium tuberculosis lineage 1 subgroup in central Vietnam

Figure 2

Phylogenetic tree of 87 lineage-1 strains from the Da Nang cohort. AP018033.1 (EAI4_VNM) was used as a reference genome. Phylogenetic trees were constructed with the maximum likelihood method using RAxML version 8.2.8 (https://github.com/stamatak/standard-RAxML) and visualized with plotTree for python v2.7 (https://github.com/katholt/plotTree). RD239, RD2bcg, deletion in furA, and SNVs in correlation with Mtb clades are shown. Mtb Mycobacterium tuberculosis, SNV single nucleotide variant, Del deletion.

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