Table 3 Overview of variants of high and moderate impact, their impact and the gene affected.

From: Whole genome sequencing of nearly isogenic WMI and WLI inbred rats identifies genes potentially involved in depression and stress reactivity

Strain

Chr

Position

ALT

Gene name

Ensembl ID

Modification

WMI

3

148895880

TA

Asxl1

ENSRNOG00000001603

Splice donor variant & splice region variant & intron variant

WMI

5

50287827

A

Zfp292

ENSRNOG00000031031

Missense variant

WMI

5

171455130

C

Wrap73

ENSRNOG00000014805

Splice donor variant & splice region variant & intron variant

WMI

8

21788512

A

Col5a3

ENSRNOG00000020525

Missense variant & splice region variant

WMI

11

84399496

C

Abcc5

ENSRNOG00000029178

Frameshift variant

WMI

12

13660098

C

Fscn1

ENSRNOG00000056585

Frameshift variant

WMI

14

9266419

GA

Wdfy3

ENSRNOG00000061121

Frameshift variant

WMI

17

49440318

G

Pou6f2

ENSRNOG00000013237

Splice donor variant & intron variant

WMI

17

55289842

T

Svil

ENSRNOG00000018110

Missense variant

WLI

2

60302395

CCT

Prlr

ENSRNOG00000057557

Frameshift variant & splice region variant

WLI

2

210884044

A

Gnat2

ENSRNOG00000019296

Missense variant

WLI

2

218889177

C

Slc30a7

ENSRNOG00000013912

Stop lost

WLI

4

152938803

T

Kdm5a

ENSRNOG00000010591

Missense variant

WLI

4

176505968

T

Slco1a2

ENSRNOG00000031249

Splice donor variant & intron variant

WLI

10

57738003

A

Nlrp1a

ENSRNOG00000023143

Missense variant

WLI

10

67392591

CA

Crlf3

ENSRNOG00000050657

Frameshift variant & splice region variant

WLI

12

41544356

C

Tpcn1

ENSRNOG00000059344

Missense variant

WLI

13

47589399

G

Pigr

ENSRNOG00000004405

Missense variant

WLI

17

49440316

AG

Pou6f2

ENSRNOG00000013237

Frameshift variant

WLI

20

22913769

A

Reep3

ENSRNOG00000000645

Missense variant