Figure 5
(a,b) The RMSDs of backbone atoms of the complex of SlCOI1-JA-Ile-SlJAZ1 (a) and SlCOI1-JA-Ile-SlJAZ5 (b) as a function of time. Each plot depicted in blue, red, orange, purple, or green was obtained from the five independent MD simulation. (c) The reported structure of the ligand binding pocket of AtCOI1-JA-Ile-AtJAZ1 (PDB ID: 3OGL). (d,e) The representative structure of the ligand binding pocket of SlCOI1-JA-Ile-SlJAZ1 (d) and that of SlCOI1-JA-Ile-SlJAZ5 (e), which was obtained by homology modeling and MD simulation. Hydrogen bonds are shown as yellow dotted lines. The RMSD plot was created by KaleidaGraph 4.1.1 (Synergy, Software, US), and the images of the 3D structures were created by MOE 2020.09.
