Table 1 Comparison of hierarchical models with different temporal structures, adjustment factors and covariates.
Model/predictor (definition) | WAIC | Univariable SIR percentile | Multivariable SIR percentile | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
2.5th | 25th | 50th | 75th | 97.5th | 2.5th | 25th | 50th | 75th | 97.5th | ||
Base model | 23,134.0 | ||||||||||
Linear time | 23,210.8 | ||||||||||
Linear time + random walk | 23,166.9 | ||||||||||
Linear time + random walk + seasonality | 23,134.0 | ||||||||||
Adjusted base model | 23,128.0 | ||||||||||
Percentage population 0–4 years old per region | 23,133.1 | 1.008 | 1.046 | 1.068 | 1.089 | 1.131 | 1.007 | 1.042 | 1.061 | 1.080 | 1.117 |
Percentage population self-identifying as East Asian per region | 23,127.0 | 1.119 | 1.161 | 1.184 | 1.207 | 1.252 | 1.089 | 1.131 | 1.153 | 1.176 | 1.221 |
Main regression model | 23,059.7 | ||||||||||
Exposures at the FSA level | |||||||||||
Median household income in FSA† | 23,125.5 | 0.882 | 0.912 | 0.929 | 0.946 | 0.978 | 0.900 | 0.931 | 0.947 | 0.964 | 0.997 |
Proportion of rural postal codes in FSA | 23,127.5 | 0.864 | 0.894 | 0.910 | 0.926 | 0.957 | 0.898 | 0.930 | 0.947 | 0.964 | 0.998 |
Population density in FSA | 23,128.3 | 1.001 | 1.049 | 1.075 | 1.102 | 1.154 | |||||
Weather | |||||||||||
Evaporation (m)† | 23,124.7 | 1.021 | 1.068 | 1.093 | 1.119 | 1.170 | |||||
Soil temperature at 0–7 cm depth (layer 1, K)† | 23,125.2 | 0.812 | 0.861 | 0.888 | 0.916 | 0.972 | |||||
Planetary boundary layer height, lowest part of the atmosphere (m)† | 23,125.6 | 1.000 | 1.024 | 1.037 | 1.050 | 1.075 | |||||
Instantaneous eastward turbulent surface stress (N m-2)† | 23,126.8 | 0.994 | 1.016 | 1.027 | 1.039 | 1.062 | |||||
Surface pressure (Pa) | 23,127.3 | 0.977 | 1.035 | 1.067 | 1.100 | 1.164 | |||||
10 m U (zonal, eastward) wind component at 10 m (m s−1) | 23,127.9 | 0.982 | 1.014 | 1.032 | 1.050 | 1.085 | |||||
2 m temperature (K) | 23,128.1 | 0.846 | 0.897 | 0.925 | 0.954 | 1.011 | |||||
Total cloud cover (0–1) | 23,128.1 | 0.929 | 0.958 | 0.973 | 0.989 | 1.018 | |||||
Total precipitation (m) | 23,128.3 | 0.950 | 0.971 | 0.982 | 0.994 | 1.015 | |||||
10 m V (meridional, northward) wind component at 10 m (m s−1) | 23,128.4 | 0.989 | 1.009 | 1.019 | 1.030 | 1.051 | |||||
Low vegetation cover (0–1) | 23,128.7 | 0.893 | 0.950 | 0.981 | 1.013 | 1.077 | |||||
High vegetation cover (0–1) | 23,129.0 | 0.936 | 0.978 | 1.001 | 1.024 | 1.071 | |||||
Photosynthetically active radiation (J m−2) | 23,129.0 | 0.811 | 0.896 | 0.944 | 0.995 | 1.098 | |||||
Instantaneous northward turbulent surface stress (N m−2) | 23,129.0 | 0.980 | 1.002 | 1.014 | 1.027 | 1.050 | |||||
Volumetric soil water layer at 0–7 cm depth (layer 1, m3 m−3) | 23,129.2 | 0.953 | 0.981 | 0.997 | 1.012 | 1.043 | |||||
UV-radiation (J m) | 23,129.2 | 0.828 | 0.908 | 0.953 | 1.001 | 1.097 | |||||
10 m wind speed at 10 m (m s−1) | 23,129.6 | 0.963 | 0.993 | 1.010 | 1.027 | 1.059 | |||||
Pollution (total column) | |||||||||||
Sulphur dioxide and nitrogen oxide (SO2 + NO2) (kg m−2)† | 23,124.2 | 1.014 | 1.055 | 1.077 | 1.099 | 1.143 | 1.055 | 1.102 | 1.127 | 1.153 | 1.204 |
Ozone (kg m−2) | 23,128.9 | 0.969 | 1.011 | 1.034 | 1.057 | 1.103 | |||||
Carbon monoxide (CO) (kg m−2) | 23,129.5 | 0.949 | 0.993 | 1.017 | 1.041 | 1.088 | |||||
Fine particulate matter < 2.5 ug (kg m−2) | 23,131.1 | 0.958 | 0.984 | 0.997 | 1.010 | 1.034 | |||||
Spores | |||||||||||
Algae†,‡ | 23,121.3 | 1.017 | 1.040 | 1.052 | 1.063 | 1.085 | 1.018 | 1.042 | 1.054 | 1.066 | 1.088 |
Deuteromycetes (fungi imperfecti)† | 23,125.7 | 0.994 | 1.030 | 1.049 | 1.068 | 1.105 | 1.019 | 1.058 | 1.078 | 1.099 | 1.139 |
Myxomycetes† | 23,126.5 | 0.993 | 1.018 | 1.030 | 1.043 | 1.065 | 0.989 | 1.014 | 1.027 | 1.040 | 1.063 |
Dothideomycetes† | 23,126.8 | 0.905 | 0.937 | 0.954 | 0.971 | 1.004 | 0.892 | 0.925 | 0.943 | 0.961 | 0.996 |
Ascomycetes (other than dothideomycetes) | 23,128.1 | 0.998 | 1.021 | 1.032 | 1.044 | 1.065 | |||||
Basidiomycetes | 23,130.0 | 0.939 | 0.975 | 0.995 | 1.015 | 1.053 | |||||
Zygomycetes | 23,130.0 | 0.968 | 0.993 | 1.004 | 1.015 | 1.032 | |||||
Pollens | |||||||||||
Malvids (Acer, Tilia, Aesculus, Cruciferae)† | 23,126.8 | 0.933 | 0.956 | 0.968 | 0.980 | 1.003 | |||||
Lamiidis (Fraxinus, Oleaceae, Plantago)† | 23,126.8 | 0.934 | 0.957 | 0.968 | 0.980 | 1.002 | |||||
Rosales (Ulmus, Morus, Prunus, Urticaceae, Crataegus) | 23,128.1 | 0.944 | 0.966 | 0.977 | 0.989 | 1.010 | |||||
Grasses (Cyperaceae, Gramineae) | 23,128.6 | 0.978 | 1.010 | 1.026 | 1.042 | 1.071 | |||||
Poales (Typhacaea) | 23,128.9 | 0.932 | 0.960 | 0.975 | 0.989 | 1.015 | |||||
Proteales (Platanus) | 23,128.9 | 0.944 | 0.971 | 0.984 | 0.996 | 1.016 | |||||
Malpighiales (Salix, Populus) | 23,129.0 | 0.981 | 1.004 | 1.016 | 1.028 | 1.050 | |||||
Caryophyllales (Chenopodiaceae, Rumex, Salsola pestifer) | 23,129.1 | 0.974 | 1.003 | 1.018 | 1.032 | 1.059 | |||||
Conifers (Cupressaceae, Larix, Pinaceae, Tsuga) | 23,129.4 | 0.982 | 1.002 | 1.012 | 1.022 | 1.041 | |||||
Fagales (Betula, Alnus, Corylus, Quercus, Fagus, Castanea) | 23,129.5 | 0.978 | 0.998 | 1.009 | 1.020 | 1.040 | |||||
Juglandaceae (Juglans, Carya) | 23,130.0 | 0.962 | 0.985 | 0.996 | 1.007 | 1.028 | |||||
Campanulids (Sambucus, Ambrosia, Solidago, Artemisia) | 23,130.1 | 0.955 | 0.986 | 1.003 | 1.020 | 1.028 | |||||
Incidence of healthcare encounters for atopy (ICD codes) | |||||||||||
Atopic dermatitis (L20)† | 23,121.1 | 1.006 | 1.026 | 1.036 | 1.047 | 1.067 | 1.007 | 1.028 | 1.040 | 1.040 | 1.072 |
Asthma (J45) | 23,127.7 | 0.951 | 0.982 | 0.998 | 1.015 | 1.047 | |||||
Rhinitis (J30) | 23,128.5 | 0.934 | 0.959 | 0.972 | 0.986 | 1.011 | |||||
Urticaria (L50) | 23,132.1 | 0.971 | 0.994 | 1.007 | 1.019 | 1.043 | |||||
Incidence of healthcare encounters by infectious categories (ICD codes) | |||||||||||
Viral intestinal infections (A08)† | 23,120.0 | 1.017 | 1.041 | 1.054 | 1.066 | 1.091 | 1.028 | 1.054 | 1.068 | 1.082 | 1.108 |
Bacterial skin infections (A69.2, K05.0, L00–L03, L08)† | 23,126.7 | 0.883 | 0.914 | 0.930 | 0.947 | 0.979 | 0.870 | 0.906 | 0.925 | 0.945 | 0.983 |
Viral LRTI (J09, J10, J11, J12, J17.1, J20.3/.4/.5/.6/.7/.8^, J21.0/.1/.8^) | 23,127.5 | 0.955 | 0.976 | 0.987 | 0.997 | 1.017 | |||||
Viral URTI (B27, J00, J02.8^, J03.8^, J04^, J05.0^) | 23,127.6 | 0.953 | 0.976 | 0.988 | 1.000 | 1.024 | |||||
Intestinal infections no organism identified (A06, A07, A09) | 23,127.8 | 0.933 | 0.960 | 0.975 | 0.990 | 1.019 | |||||
Bacterial LRTI (A15, A16, J13, J14, J15, J16.0, J17.0, J20.0/.1/.2/.8^, J21.8^) | 23,127.9 | 0.961 | 0.981 | 0.992 | 1.003 | 1.022 | |||||
Bacterial intestinal infections (A01–A05) | 23,128.4 | 0.951 | 0.975 | 0.987 | 1.000 | 1.025 | |||||
Bacterial URTI (J02.0/.8^, J03.0/.8^, J04^, J05^, J36.0^) | 23,129.4 | 0.888 | 0.918 | 0.933 | 0.949 | 0.980 | |||||
URTI no organism identified (J01, J02.8/.9, J03.8/.9, J04, J05.0, J06, J36, J39) | 23,129.7 | 0.929 | 0.958 | 0.974 | 0.990 | 1.020 | |||||
Fungal infections (B37, J17.2) | 23,129.9 | 0.900 | 0.930 | 0.946 | 0.962 | 0.993 | |||||
Viral skin infections (B00–B02, B05–B09) | 23,129.9 | 0.909 | 0.940 | 0.957 | 0.974 | 1.007 | |||||
LRTI no organism identified (J16.8, J17.3/.8, J18, J20.8/.9, J21.8/.9, J22) | 23,130.1 | 0.921 | 0.950 | 0.966 | 0.982 | 1.013 | |||||
Incidence of healthcare encounters for specific pathogens (N of admissions) | |||||||||||
Mycoplasma (8296)† | 23,117.2 | 1.021 | 1.038 | 1.047 | 1.056 | 1.073 | 1.024 | 1.041 | 1.050 | 1.059 | 1.076 |
Candida (283,837)† | 23,123.6 | 0.869 | 0.900 | 0.917 | 0.934 | 0.966 | 0.848 | 0.884 | 0.903 | 0.923 | 0.962 |
Campylobacter (8368)† | 23,123.6 | 0.996 | 1.015 | 1.025 | 1.036 | 1.055 | 1.005 | 1.025 | 1.036 | 1.047 | 1.067 |
Coronavirus (1658)† | 23,124.2 | 1.000 | 1.014 | 1.020 | 1.027 | 1.040 | 0.998 | 1.011 | 1.018 | 1.025 | 1.038 |
Measles (2262)† | 23,124.4 | 0.998 | 1.012 | 1.019 | 1.027 | 1.040 | 1.000 | 1.015 | 1.022 | 1.029 | 1.042 |
Klebsiella (120,905)† | 23,124.8 | 0.983 | 1.011 | 1.027 | 1.042 | 1.073 | 1.003 | 1.036 | 1.053 | 1.071 | 1.105 |
Haemophilus influenzae (19,927)† | 23,125.9 | 0.988 | 1.007 | 1.017 | 1.027 | 1.047 | |||||
Salmonella (16,585)† | 23,126.0 | 0.991 | 1.009 | 1.019 | 1.029 | 1.048 | 0.990 | 1.009 | 1.019 | 1.029 | 1.048 |
Clostridium (214,593)† | 23,126.1 | 0.920 | 0.947 | 0.962 | 0.976 | 1.005 | |||||
Herpes simplex (103,857)† | 23,126.2 | 0.918 | 0.945 | 0.959 | 0.974 | 1.002 | |||||
Borrelia (6955)† | 23,126.3 | 0.936 | 0.960 | 0.972 | 0.984 | 1.006 | |||||
Adenovirus (10,012)† | 23,126.3 | 0.988 | 1.005 | 1.015 | 1.024 | 1.041 | |||||
Metapneumovirus (2655)† | 23,126.6 | 0.957 | 0.975 | 0.983 | 0.992 | 1.008 | 0.952 | 0.970 | 0.979 | 0.987 | 1.004 |
Cytomegalovirus (8749)† | 23,126.8 | 0.989 | 1.006 | 1.015 | 1.024 | 1.041 | |||||
Pseudomonas (103,288)† | 23,127.0 | 0.930 | 0.957 | 0.971 | 0.986 | 1.014 | |||||
Mycobacterium (23,866) | 23,127.0 | 0.959 | 0.979 | 0.990 | 1.001 | 1.021 | |||||
Molluscum contagiosum (10,336) | 23,127.0 | 0.942 | 0.963 | 0.974 | 0.985 | 1.006 | |||||
Meningococcus (1839) | 23,127.0 | 0.961 | 0.977 | 0.986 | 0.995 | 1.011 | |||||
Varicella (53,077) | 23,127.0 | 0.972 | 0.995 | 1.007 | 1.019 | 1.042 | |||||
Papillomavirus (77,856) | 23,127.3 | 0.922 | 0.951 | 0.966 | 0.981 | 1.008 | |||||
Mumps (10,498) | 23,127.3 | 0.981 | 1.000 | 1.009 | 1.019 | 1.037 | |||||
Bordetella (13,630) | 23,127.5 | 0.953 | 0.973 | 0.983 | 0.993 | 1.012 | |||||
Influenza (410,237) | 23,127.6 | 0.957 | 0.976 | 0.986 | 0.996 | 1.014 | |||||
Epstein Barr Virus (6007) | 23,127.7 | 0.974 | 0.990 | 0.999 | 1.007 | 1.024 | |||||
Herpes virus (5167) | 23,127.7 | 0.977 | 0.994 | 1.003 | 1.012 | 1.029 | |||||
Parainfluenza (2490) | 23,127.8 | 0.967 | 0.983 | 0.992 | 1.000 | 1.016 | |||||
Zoster (248,482) | 23,127.8 | 0.891 | 0.921 | 0.937 | 0.953 | 0.985 | |||||
Hepatitis (2826) | 23,127.8 | 0.981 | 0.997 | 1.005 | 1.013 | 1.028 | |||||
Shigella (1274) | 23,127.8 | 0.984 | 0.998 | 1.006 | 1.014 | 1.028 | |||||
Norovirus (7507) | 23,127.8 | 0.974 | 0.992 | 1.001 | 1.009 | 1.026 | |||||
Respiratory Syncytial Virus (86,764) | 23,128.0 | 0.970 | 0.989 | 0.999 | 1.009 | 1.028 | |||||
Model/predictor (definition) | WAIC | Univariable SIR percentile | Multivariable SIR percentile | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
2.5th | 25th | 50th | 75th | 97.5th | 2.5th | 25th | 50th | 75th | 97.5th | ||
Bacillus (3224) | 23,128.0 | 0.969 | 0.987 | 0.997 | 1.006 | 1.024 | |||||
Proteus (42,125) | 23,128.0 | 0.958 | 0.981 | 0.993 | 1.005 | 1.028 | |||||
Staphylococcus (348,123) | 23,128.0 | 0.941 | 0.973 | 0.991 | 1.008 | 1.043 | |||||
Rotavirus (11,846) | 23,128.1 | 0.978 | 0.997 | 1.006 | 1.016 | 1.033 | |||||
Enterovirus (73,642) | 23,128.2 | 0.955 | 0.977 | 0.989 | 1.001 | 1.024 | |||||
Escherichia coli (588,333) | 23,128.4 | 0.915 | 0.947 | 0.965 | 0.983 | 1.017 | |||||
Streptococcus (348,123) | 23,128.4 | 0.888 | 0.919 | 0.936 | 0.953 | 0.985 | |||||
Parvovirus (14,450) | 23,128.6 | 0.952 | 0.973 | 0.984 | 0.995 | 1.016 | |||||