Table 1 List of top five upregulated and downregulated DEGs.

From: Temporal transcriptomic profiling reveals dynamic changes in gene expression of Xenopus animal cap upon activin treatment

 

Post 1h_activin (vs Pre_activin)

Post 3h_activin (vs Pre_activin)

Post 6h_activin (vs Pre_activin)

Post 9h_activin (vs Pre_activin)

Upregulated

socs3.L

socs3.S

foxa4.L

Undescribed-1*

foxa4.S

foxa4.L

foxa4.S

pcdh8.2.S

unc93a.L

socs3.L

pcdh8.2.L

foxa4.L

foxa4.S

pcdh8.2.S

chrd.2.L

foxa4.L

chrd.2.L

pcdh8.2.L

pnhd.S

foxa4.S

Downregulated

pdp2.L

Undescribed-2*

plekhg7.L

Undescribed-3*

spef1.S

Undescribed-4*

cpeb1.L

nkx3-3.L

cpeb1.S

Undescribed-5*

Undescribed-4*

ccnb5.L

Undescribed-6*

Undescribed-7*

Undescribed-8*

Undescribed-4*

ccnb5.L

msmo1.L

Undescribed-6*

Undescribed-5*

Undescribed-1*, Xelaev18038693m.g; Undescribed-2*, Xelaev18005995m.g; Undescribed-3*, loc100487103.1; Undescribed-4*, Xelaev18036268m.g; Undescribed-5*, Xelaev18004162m.g; Undescribed-5*, Xelaev18004162m.g; Undescribed-6*, Xelaev18004163m.g; Undescribed-7*, loc100494194.L; Undescribed-8*, Xelaev18008393m.g

  1. DEGs were identified in the comparison of each Post_activin vs. Pre_activin sample. Sequences that did not show the significant hits or annotations (listed as model IDs starting with “loc” and “Xelaev”) were represented as undescribed 1–8. X. laevis is an allotetraploid, and contains two sets of genes, L and S genes.
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