Table 2 Pairwise comparison of sets with validated non-CNV exons and the GIAB high-confidence CNV set (svclassify): elements on the main diagonal indicate the set size, for other elements the denominator of a fraction is the number of shared exons in the sets and the numerator is the number of exons with the same state.
From: Benchmarking germline CNV calling tools from exome sequencing data
svclassify | hapmap | mccarroll2008 | conrad2010 | pilot | phase3 | |
---|---|---|---|---|---|---|
svclassify | 184 | |||||
hapmap | 41/41 | 1970 | ||||
mccarroll2008 | 41/43 | 1211/1282 | 3875 | |||
conrad2010 | 81/85 | 975/1228 | 1192/1514 | 8230 | ||
pilot | 164/174 | 406/925 | 651/1276 | 1364/2431 | 28104 | |
phase3 | 103/124 | 1355/1522 | 2272/2450 | 3142/3847 | 3808/6176 | 54137 |