Figure 7
From: Dynamic differential evolution schemes of WRKY transcription factors in domesticated and wild rice
Analysis of sites under highly significant positive selection suggests high conservation of the WRKY domain throughout the Oryza genus with mutations predominantly occurring outside the domain. Representative single copy ortholog WRKYs are arranged according to group shown on the left. WRKYs in red font are determined to be highly conserved based on the site model PAML tests in Table 2 (Supplementary Table S7). Double domain containing Group I WRKYs were not included in the diagram. Amino acids are aligned relative to the location of the WRKY domain with red and blue 0 indicating first and last amino acid of the domain. Bayes-Empirical-Bayes estimates of dN/dS at each amino acid were analyzed using PAML; yellow bars represent sites with p-values ≥ 0.95 and red bars p-values ≥ 0.99. Non-significant data (p-value < 0.95) is not indicated. Blue bars mark the start and end of each WRKY protein.
