Table 1 Classification of WRKY genes within the Oryza genus.
From: Dynamic differential evolution schemes of WRKY transcription factors in domesticated and wild rice
Oryza species | Group classification | Total WRKY | Genome type | Estimated genome size (Mb) | Sequenced genome SiZe (Mb) | Ave. number of WRKY per Mb | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Ia | Ib | IIa | IIb | IIc | IId | IIe | III | IV | |||||||
Wild | O. barthii | 9 | 3 | 3 | 7 | 23 | 7 | 10 | 28 | 5 | 95 | AA | 411 | 308 | 0.31 |
O. brachyantha | 9 | 0 | 3 | 4 | 19 | 4 | 11 | 24 | 9 | 83 | FF | 362 | 261 | 0.32 | |
O. glumaepatula | 10 | 2 | 4 | 7 | 19 | 7 | 11 | 28 | 5 | 93 | AA | 464 | 373 | 0.25 | |
O. meridionalis | 10 | 1 | 4 | 6 | 20 | 7 | 10 | 27 | 3 | 88 | AA | 435 | 336 | 0.26 | |
O. nivara | 11 | 2 | 4 | 7 | 22 | 7 | 11 | 28 | 2 | 94 | AA | 448 | 338 | 0.28 | |
O. punctata | 11 | 0 | 5 | 8 | 20 | 8 | 10 | 30 | 2 | 94 | BB | 423 | 394 | 0.24 | |
O. rufipogon | 12 | 3 | 4 | 7 | 20 | 7 | 11 | 27 | 3 | 94 | AA | 445 | 338 | 0.28 | |
Cultivated | O. sativa subsp. japonica cv. Nipponbare | 11 | 2 | 4 | 8 | 21 | 7 | 11 | 31 | 3 | 98 | AA | 387 | 373 | 0.26 |
O. sativa subsp. indica cv. MH63 | 11 | 4 | 4 | 7 | 24 | 7 | 10 | 25 | 2 | 94 | AA | 386 | 360 | 0.26 | |
O. sativa indica cv. R498 | 11 | 1 | 4 | 7 | 25 | 7 | 10 | 30 | 3 | 98 | AA | 391 | 390 | 0.25 | |
O. glaberrima | 10 | 1 | 4 | 6 | 16 | 7 | 10 | 31 | 2 | 87 | AA | 358 | 316 | 0.28 | |
