Figure 5
From: Extensive variation in the intelectin gene family in laboratory and wild mouse strains
taken from the UCSC Genome Browser.
Optical mapping of the intelectin region in laboratory strain mice. Optical mapping results from four strains (PWD, PWK, C57BL/6NCrl, CAST/EiJ) have been aligned against the reference genome (green bar, reference assembly, blue bar new strain assembly with depth of coverage indicated by the dark blue). The yellow and blue vertical lines in these bars represent NtBspQI restriction enzyme cutting sites or DLE-1 binding sites (CTTAAG motif). A blue vertical line indicates sites that are matching between the new assembly and the reference genome, yellow indicates that the site is there in the reference or the new assembly, but are considered non-matching. Regions showing structural variation, with respect to the C57BL6/J reference genome, are annotated as SV, green lines showing putative insertions and red lines showing putative deletions. An extra ~ 400 kb of sequence is in both PWK and PWD strains in the Itln1 region, consistent with the presence of the full complement of intelectin genes. Gene annotations are at the top and are
