Table 3 Summary of publicly available, high-throughput experimental data considered in the current study.

From: Comparative transcriptome analyses reveal genes associated with SARS-CoV-2 infection of human lung epithelial cells

GEO accession number

Cell line

Virus infection studied after 24 h (along with GSM ids)

Platform considered

GSE147507

Normal Human Bronchial Epithelial (NHBE)

SARS-CoV-2 (GSM4432381, GSM4432382, GSM4432383), Mock treatment (GSM4432378, GSM4432379, GSM4432380)

Illumina NextSeq 500 (Homo sapiens)

GSE153970

Human airway epithelium (HAE)

SARS-CoV-2 (GSM4661083, GSM4661084, GSM4661085), Mock treatment (GSM4661080, GSM4661081, GSM4661082)

Illumina NovaSeq 6000 (Homo sapiens)

GSE47962

Human airway epithelium (HAE)

SARS-CoV (GSM1163617, GSM1163618, GSM1163619), H1N1 (GSM1163602, GSM1163603, GSM1163604), SARS-CoV-BatSRBD (GSM1163543,GSM1163544), SARS-CoV-dORF6 (GSM1163569, GSM1163570, GSM1163571), Mock treatment (GSM1163650,GSM1163651, GSM1163652)

Agilent-014850 whole human genome microarray 4 × 44 K G4112F

GSE49840

Polarized Calu3

H7N7 (GSM1208108, GSM1208109, GSM1208110, GSM1208111), H5N1 (GSM1208139, GSM1208140, GSM1208141, GSM1208142), H3N2 (GSM1208124, GSM1208125, GSM1208126, GSM1208127), H7N9 (GSM1208076, GSM1208077, GSM1208078, GSM1208079), Mock treatment (GSM1208092, GSM1208093, GSM1208094, GSM1208095)

Agilent-039494 SurePrint G3 human GE v2 8 × 60 K microarray

GSE17400

Calu3 subclone 2B4

SARS-CoV (GSM432332, GSM432333, GSM432360), DOHV (GSM432398, GSM432399, GSM432400), Mock treatment (GSM432033, GSM432034, GSM432209)

Affymetrix human genome U133 Plus 2.0 array

GSE71766

Human bronchial epithelial (BEAS-2B)

H1N1 (GSM1844862, GSM1844863, GSM1844864, GSM1844865, GSM1844866), RV16 (GSM1844907, GSM1844908, GSM1844909, GSM1844910, GSM1844911), Control (GSM1844817, GSM1844819, GSM1844820, GSM1844818, GSM1844821), H1N1 + RV16 (GSM1844952, GSM1844953, GSM1844954, GSM1844955, GSM1844956)

Affymetrix human genome U219 array

GSE48575

Normal human bronchial epithelial cells (NHBECs)

H1N1pdm (GSM1181433, GSM1181434, GSM1181435), sH1N1 (GSM1181442, GSM1181443, GSM118144), Control for H1N1pdm (GSM1181427, GSM1181428, GSM1181429), Control for sH1N1(GSM1181436, GSM1181437, GSM1181438)

Illumina Human HT-12 V4.0 expression beadchip

GSE150819

Human bronchial organoids

Uninfected human bronchial organoid (GSM4559193, GSM4559194, GSM4559195), SARS-CoV-2 infected human bronchial organoid (GSM4559196, GSM4559197, GSM4559198)

Illumina NovaSeq 6000

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