Table 2 Top 20 SNPs of GWAS results in all subjects for emphysema.
From: A genome-wide association study of quantitative computed tomographic emphysema in Korean populations
SNP | Nearest gene | Genetic locus | Chr | Position (bp) | Ref/Alt | ALL main model | ||||
---|---|---|---|---|---|---|---|---|---|---|
MAF | P value | β | SE | N | ||||||
rs117084279 | PIBF1 | 13q22 | 13 | 73,444,485 | T/C | 0.021 | 8.85E−09 | − 1.37 | 0.235 | 548 |
rs7339277 | KLF12 | 13q22 | 13 | 74,350,128 | A/G | 0.056 | 1.40E−07 | − 0.76 | 0.143 | 545 |
rs142659816 | – | 20q13 | 20 | 48,635,162 | G/A | 0.037 | 3.11E−07 | − 0.91 | 0.175 | 548 |
rs56784511 | KCNJ3 | 2q24 | 2 | 155,641,769 | A/G | 0.067 | 3.29E−07 | − 0.71 | 0.137 | 548 |
rs66771402 | – | 7p14 | 7 | 42,567,077 | C/T | 0.304 | 5.06E−07 | 0.36 | 0.071 | 548 |
rs67354756 | KCNJ3 | 2q24 | 2 | 155,640,196 | C/G | 0.069 | 6.35E−07 | − 0.68 | 0.135 | 548 |
rs1917213 | – | 7p14 | 7 | 42,577,872 | A/T | 0.310 | 6.36E−07 | 0.36 | 0.071 | 548 |
rs76470312 | – | 8p21 | 8 | 23,887,223 | A/G | 0.019 | 9.45E−07 | − 1.20 | 0.241 | 548 |
rs143675498 | CDH18 | 5p14 | 5 | 19,850,049 | A/G | 0.013 | 1.33E−06 | − 1.42 | 0.291 | 547 |
rs6719455 | KCNJ3 | 2q24 | 2 | 155,640,626 | C/A | 0.104 | 1.62E−06 | − 0.55 | 0.113 | 547 |
rs6897483 | – | 5p13 | 5 | 29,735,073 | A/T | 0.192 | 1.67E−06 | 0.40 | 0.082 | 548 |
rs6897957 | – | 5p13 | 5 | 29,735,311 | A/T | 0.192 | 1.67E−06 | 0.40 | 0.082 | 548 |
rs10041866 | – | 5p13 | 5 | 29,738,133 | C/A | 0.193 | 2.06E−06 | 0.39 | 0.081 | 548 |
rs6880736 | – | 5p13 | 5 | 29,739,430 | C/A | 0.193 | 2.06E−06 | 0.39 | 0.081 | 548 |
rs7704866 | – | 5p13 | 5 | 29,736,738 | A/G | 0.193 | 2.06E−06 | 0.39 | 0.081 | 548 |
rs79879780 | AL354720.1 | 13q22 | 13 | 73,699,403 | C/T | 0.026 | 2.10E−06 | − 1.00 | 0.209 | 548 |
rs16950278 | LOC101927284 | 13q32 | 13 | 95,533,306 | A/G | 0.015 | 2.18E−06 | − 1.34 | 0.279 | 548 |
rs73547640 | LOC101927284 | 13q32 | 13 | 95,531,311 | T/C | 0.015 | 2.18E−06 | − 1.34 | 0.279 | 548 |
rs2168555 | – | 5p13 | 5 | 29,732,700 | T/C | 0.192 | 2.24E−06 | 0.39 | 0.082 | 548 |
rs149086677 | FBLN2 | 3p25 | 3 | 13,629,075 | G/A | 0.028 | 2.30E−06 | − 0.90 | 0.188 | 548 |