Table 4 Description and annotation of identified markers (P < 0.0001).
No | SNP | Sequence | Trait- Index | Chromosome | Position (bp) | Molecular process | Biological process |
|---|---|---|---|---|---|---|---|
1 | rs10875 | TGCAGCAAAGAAAGGAGAGCAC GAGGGGGTGGCCCAGGCCCTTA CCGTGAACAGCTCGCCGAGA_20 | SW- Mean | 4B | 56.065 | Oxidoreductase activity | Oxidation–reduction process |
2 | rs2321 | TGCAGAAGTAGAACCAGAGGCG CCCTTCTCCTCTCTATACCCCGC AACCGTCACAGGATTAATA_48 | GY- Mean | 6A | 55.893 | DNA-binding transcription factor activity | Regulation of transcription, DNA-templated |
3 | rs30755 | TGCAGCGCGGCAACGCCGTGGT CGTCATGTCGGGCTTCGCCATG GACTCCGTGATGAGGGCCGT_13 | SW- WAASBY | 4B | 58.338 | Fatty-acyl-CoA synthase activity | jasmonic acid biosynthetic process |
4 | rs41275 | TGCAGCTTGATCACGCGCATGT AGCTGAGCAACTCGGTGATGGC CTTCATGCGCTCGTCTCGCT_43 | GN- Wi | NA | NA | ATPase-coupled transmembrane transporter activity | Transmembrane transport |
5 | rs41740 | TGCAGCTTTAACACTGTTTAACC CCCCCTGTGCAGCCTGATGGCC AGATGCCCGAGATCGGAAG_21 | GN- Wi | 1D | 77.324 | Structural constituent of cytoskeleton | Microtubule cytoskeleton organization |
6 | rs53737 | TGCAGGTGAGCCGCCGAGCTGC TGCTGCTGCTTCCGCCCGATTT GATTTACAAATTCTGTTCTG_37 | SW- YSI SW- ASV | 1B | 104.719 | Anaphase-promoting complex | - |
7 | rs57405 | TGCAGTATCTGAGTGTGAACTA GTCGCAGTGACAATGCATGTCG TTAAAAAGAATATGAACTAC_55 | SW- YSI GY- YSI | 7A | 111.704 | Protein kinase activity | Protein phosphorylation |
8 | rs57539 | TGCAGTATTCATAGTGTGGCTT TGAGTGGAACTACACGATTTAG AGTTCACCACCTGCATTCTG_31 | SW- YSI | 6B | 50.104 | Peptidase activity | Signal peptide processing |
9 | rs5823 | TGCAGAGCACGAAGTCCACGG CGTGATCCTTTTACTTTATTCCT TAAGCCAAGGGAGGTCGTAC_18 | GY- Mean | 4A | 9.109 | Oxidoreductase activity | Oxidation–reduction process |
10 | rs59777 | TGCAGTCTTTCAGAAGTGCAGA TGTAAACGTATTGCTATATCAG TGGTTTGAACTACATGGTAA_10 | GY- WAASBY | 2D | 58.883 | Protein binding | Positive regulation of protein catabolic process |
11 | rs63903 | TGCAGTTGAGGACAAGCACACG GATGGAGTCTGGGGCGACGCCT GTCCTGGAGAGCAGGTCATC_13 | GY- YSI | 7A | 111.704 | Transferase activity, transferring acyl groups other than amino-acyl groups | Fatty acid biosynthetic process |
12 | rs6859 | TGCAGAGGGCGCGCGGGGACAG AGTGAATCGGGCAGAAGCAGAG GAGGATAAGAGAGACGAAGC_16 | GN- bi | 1B | 66.042 | Integral component of membrane | – |
13 | rs6887 | TGCAGAGGGGGGCCAGGTAGGC GTGTGCTATGGGAGGATGGCCA CTAACCTGCCTGACCCGACG_42 | SW- bi | 1A | 111.964 | Hydrolase activity, hydrolyzing O-glycosyl compounds | – |
14 | rs736 | TGCAGAAAGGTACCACTCATTC GTACATCACTCCAACTGATGTA TGAAGGTTGTTCATGGCGAC_18 | SW- HMRPGV | 4B | 56.065 | Hydrolase activity | Phosphatidylinositol dephosphorylation |
15 | rs2302 | TGCAGAAGTAAAGAAGCTGAGA TGCGAGACAGTATAAATTTGCT AATAGACTAGCTTTGAAAGA_28 | GN- WAASBY | 3A | 11.391 | – | DNA repair |
