Table 4 Differential taxa in LDA analysis.
From: The gastric microbiota in patients with Crohn’s disease; a preliminary study
Features | Corpus | Antrum | Liquid | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Pvalues | FDR | Crohn | Control | LDAscore | Pvalues | FDR | Crohn | Control | LDAscore | Pvalues | FDR | Crohn | Control | LDAscore | |
Otu0015/Neisseriaceae | 1.6E−04 | 1.6E−02 | 2.5E+04 | 3.6E+05 | − 5.22 | 3.4E−04 | 2.4E−02 | 3.2E+04 | 3.3E+05 | − 5.17 | 7.0E−04 | 6.0E−02 | 4.0E+04 | 2.6E+05 | − 5.04 |
Otu0008/Neisseria | 6.2E−05 | 1.3E−02 | 5.9E+04 | 6.9E+05 | − 5.5 | 3.4E−04 | 2.4E−02 | 8.4E+04 | 6.4E+05 | − 5.45 | 9.3E−04 | 6.0E−02 | 9.0E+04 | 4.2E+05 | − 5.22 |
Otu0027/Streptococcaceae | 5.0E−04 | 3.5E−02 | 8.2E+04 | 4.1E+04 | 4.31 | 3.5E−03 | 7.5E−02 | 7.8E+04 | 4.0E+04 | 4.28 | |||||
Otu0191/Rhodocyclaceae—C39 | 2.4E−04 | 2.4E−02 | 3.3E+03 | 8.2E+01 | 3.2 | 2.1E−02 | 2.2E−01 | 2.5E+03 | 0.0E+00 | 3.09 | |||||
Otu0180/RF39_genus | 1.3E−02 | 1.6E−01 | 8.9E+01 | 1.7E+03 | − 2.91 | 1.3E−04 | 2.8E−02 | 5.1E+01 | 2.8E+03 | − 3.14 | |||||
