Table 1 Sample names, file names, and sequencing statistics of BIGseq on fractions of yeast genome DNA.
From: Reconstructing and counting genomic fragments through tagmentation-based haploid phasing
Sample name | Raw BAM file | Library-representing BAM file | Total fragments mappable to yeast before dedupe | Fragment number with unique UFI after dedupe | Average duplication rate of fragments | Average length of fragments | Percentage genome covered by fragments |
|---|---|---|---|---|---|---|---|
6Y5j | 6Y5j_S37_Ckite.bam | 6Y5j_S37_Ckite_pemerged_deduped.bam | 79,567 | 12,436 | 6.4 | 233.8 | 8.8 |
6Y5l | 6Y5l_S38_Ckite.bam | 6Y5l_S38_Ckite_pemerged_deduped.bam | 103,722 | 13,930 | 7.4 | 233.1 | 9.2 |
6Y5n | 6Y5n_S39_Ckite.bam | 6Y5n_S39_Ckite_pemerged_deduped.bam | 57,997 | 12,488 | 4.6 | 237.3 | 8.6 |
6Y5p | 6Y5p_S40_Ckite.bam | 6Y5p_S40_Ckite_pemerged_deduped.bam | 88,350 | 13,618 | 6.5 | 225.0 | 8.7 |
6Y6p | 6Y6b_S41_Ckite.bam | 6Y6b_S41_Ckite_pemerged_deduped.bam | 28,875 | 9232 | 3.1 | 225.4 | 6.6 |
6Y6d | 6Y6d_S42_Ckite.bam | 6Y6d_S42_Ckite_pemerged_deduped.bam | 40,055 | 9984 | 4.0 | 220.8 | 7.1 |
6Y6f | 6Y6f_S43_Ckite.bam | 6Y6f_S43_Ckite_pemerged_deduped.bam | 50,127 | 9760 | 5.1 | 220.7 | 7.0 |
6Y6h | 6Y6h_S44_Ckite.bam | 6Y6h_S44_Ckite_pemerged_deduped.bam | 48,896 | 9440 | 5.2 | 222.3 | 6.6 |
