Figure 2

Parallel reaction monitoring analysis of the distinct peptides derived from Porphyromonas gingivalis (Pg). (a) Chromatogram of the fragment ions for the Pg-unique peptide, DVTVEGSNEFAPVQNLTGSAVGQK and its five different amino-acid fragments in Pg- or control-treated mouse feces, and that of the synthetic peptide used as the internal standard. (b) Detection of this peptide in Pg-treated, but not CMC control-treated, mice, using a synthetic peptide as internal standard. Sample preparation was performed in triplicate from the pooled feces; peptides were quantified based on the median peak area ratio of each fragment ion. (c) Phylum-, (d) family-, and (e) genus-level distributions of the fecal microbiome. Taxonomic assignments of the peptides identified via metaproteome analysis of fecal samples were performed using Unipept. The distributions were profiled based on the number of taxa-specific peptides. āControl 1Ā dayā: CMC control-treated, 1 d after the first injection; āControl 30Ā daysā: CMC control-treated, 30 d after the tenth injection; āPg 1Ā dayā: Pg-treated, 1 d after the first injection: āPg 30Ā daysā: Pg-treated, 30 d after the tenth injection.