Table 2 Sequence identity and quality scores of homology models for pathogen Lig Es based on structurally-characterized representatives in the DNA-bound (Ame-lig) and DNA-free (Psy-lig) conformations.

From: Bacteriophage origin of some minimal ATP-dependent DNA ligases: a new structure from Burkholderia pseudomallei with striking similarity to Chlorella virus ligase

 

Ame-lig % ID (Qmean)

Psy-lig % ID (Qmean)

Cys pairs predicted by DiANNA

V. cholera

41.86 (− 0.92)

44.14 (− 0.10)

NA

N. meningitides

35.57 (− 0.57)

40.48 (0.00)

C200–C221

H. influenzae

35.97 (− 1.52)

37.85(− 0.68)

C196–C217

C. jejuni

35.74 (− 1.56)

36.58 (− 0.82)

C120–C128

C206–C227

  1. Disulfide connectivity is predicted by highest-scoring cysteine pairs from DiANNA.
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