Table 7 MM/PBSA calculations of binding free energy for six mutant-PK083 complexes from 1st MD production run.

From: Pathogenic genetic variants from highly connected cancer susceptibility genes confer the loss of structural stability

Complexes

Van der Waal energy (KJ mol−1)

Electrostatic energy (KJ mol−1)

Polar solvation energy (KJ mol−1)

SASA energy (KJ mol−1)

Binding energy (KJ mol−1)

V1687G-PK083

 − 162.942 ± 8.328

 − 4.006 ± 4.198

72.501 ± 10.932

 − 15.973 ± 0.812

 − 110.419 ± 11.896

V1736G-PK083

 − 176.793 ± 9.540

 − 29.386 ± 4.914

111.041 ± 11.923

 − 15.701 ± 0.803

 − 110.839 ± 12.909

V216G-PK083

 − 163.826 ± 9.659

 − 14.571 ± 4.866

81.793 ± 11.348

 − 16.607 ± 0.861

 − 113.211 ± 10.362

L194H-PK083

 − 168.406 ± 8.744

 − 29.885 ± 8.523

121.305 ± 13.577

 − 15.397 ± 0.843

 − 92.383 ± 11.060

I2865T-PK083

 − 128.608 ± 9.752

 − 11.997 ± 5.278

55.265 ± 7.757

 − 14.316 ± 1.079

 − 99.656 ± 9.611

V2906A-PK083

 − 86.402 ± 9.708

 − 27.661 ± 11.869

80.415 ± 20.936

 − 9.403 ± 1.008

 − 43.051 ± 12.340