Table 4 The pathogenic variants detected exclusively by EVIDENCE.

From: Powerful use of automated prioritization of candidate variants in genetic hearing loss with extreme etiologic heterogeneity

Patient ID

Gender/age

Clinical phenotype

Gene

HGVS nomenclature

Zygosity

ACMG/AMP 2015

Nucleotide change

Protein change

Classification

Criteria

SB308–611

M/7m

Hearing loss, heart mur-mur

PTPN11

NM_002834.3:c.922A>G

NP_002825.3:p.Asn308Asp

Heterozygote

Pathogenic

PS2, PM1, PM2, PM5, PP1, PP2, PP3, PP5

SH271–631

M/10m

Hearing loss, pulmonary stenosis

PTPN11

NM_002834.3:c.922A>G

NP_002825.3:p.Asn308Asp

Heterozygote

Pathogenic

PS2, PM1, PM2, PM5, PP1, PP2, PP3, PP5

SH250–590

F/0

Profound hearing loss

PTPN11

NM_002834.3:c.836A>G

NP_002825.3:p.Tyr279Cys

Heterozygote

Pathogenic

PS2, PM1, PM2, PM5, PM6, PP2, PP3, PP5

SB542–1014

M/8m

Mixed hearing loss, mandibulofacial anomaly

EFTUD2

NM_001258353.1:c.271+1G>A

NP_001245282.1:p.Glu91Aspfs*24

Heterozygote

Pathogenic

PSV1, PS2,PS3, PM2, PP4