Table 2 Observed allelic differences between MLSTs in the same or different clonal complexes.

From: Whole-genome sequencing and ad hoc shared genome analysis of Staphylococcus aureus isolates from a New Zealand primary school

Clonal complexes present in dataset19

7-Locus MLSTs present in dataset (n wgMLST allelic differences within MLST)

7-Locus MLST pairs with 15–120 allelic differences in wgMLST (n wgMLST allelic differences, n 7-locus MLST loci differences)

7-Locus MLST pairs with 280–420 allelic differences in wgMLST (n wgMLST allelic differences, n 7-locus MLST loci differences)

CC1

1

(0–42)

1:2851

(39–62, 1)

1:188

(260–267, 2)

188

(0–38)

1:5388

(45–65, 1)

188: 2851

(262–265, 3)

2851

(0–4)

2851:5388

(82–84, 2)

188: 5388

(273–275, 2)

5388

(n/a)

    

CC5

5

(0–61)

5: 149

(28–59, 1)

5:6

(322–333, 2)

6

(0–29)

  

6:149

(323–325, 3)

149

(0)

    

CC8

8

(79)

8:630

(112–115, 1)

8:72

(323–383, 3)

72

(1–48)

8:828

(22–89, 1)

72:630

(319–323, 3)

630

(n/a)

630:828

(116–117, 2)

72:828

(326–332, 4)

828

(0–3)

    

CC15

15

(0–58)

15:5386

(19–54, 1)

 

–

5386

(0–1)

    

CC22

22

(0–2)

22:5387

(45–46, 1)

 

–

5387

(n/a)

    

CC30

30

(0–45)

30:39

(85–97, 2)

 

–

39

(0–48)

30:4826

(43–40, 1)

  

4826

(0)

30:5112

(38–43, 1)

  

5112

(0–2)

30:5383

(92–94, 3)

  

5383

(0)

30:5384

(54–60, 2)

  

5384

(1–2)

39:4826

(83–95, 3)

  
  

39:5112

(82–94, 3)

  
  

39:5383

(44–53, 1)

  
  

39:5384

(95–108, 4)

  
  

4826:5112

(42–43, 2)

  
  

4826:5383

(90, 4)

  
  

4826:5384

(58–59, 2)

  
  

5112:5383

(88–89, 4)

  
  

5112:5384

(56–58,3)

  
  

5383:5384

(101–102, 4)

  

CC45

45

(0–76)

 

(56–74, 1)

 

–

508

(0–53)

 

(44–73, 1)

  

5385

(0)

 

(60–70, 1)

  

CC97

97

(0–38)

 

–

 

–

Unclassified

12

(0–1)

 

(97–98, 2)

All remaining 7-locus MLST pairs (including between clonal complexes)

25

(0–3)

  

59

(0–41)

  

78

(0–28)

  

121

(1)

  

672

(2)

  

779

(0–1)

  

894

(0–3)

  

2276

(n/a)

  

5111

(0–3)

  

5390

(n/a)

  
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