Table 5 The PAFQR gene amplicons sequences of some selected A. baumannii isolates and their identity to sequences deposited in GeneBank database.

From: Impact of target site mutations and plasmid associated resistance genes acquisition on resistance of Acinetobacter baumannii to fluoroquinolones

Gene(a)

GeneBank accession no. for the deposited studied sequence

Strain showing sequence homology to the studied sequence

% of the identity of the studied sequence to its homology in database(b)

Profile

qnrS1

KY640596.1

Acinetobacter baumannii strain E162ABMO

98.28

1, 2, 3

acc(6)-ic-cr

CP040425.1

Acinetobacter baumannii strain PB364

97.98

2, 3(c)

oqxA

LR134280.1

Klebsiella aerogenes strain NCTC9793

99.78

1, 2, 3

oqxB

CP023134.2

Klebsiella pneumoniae

99.77

2, 3(c)

  1. The level of significance for the % of identity of the studied sequence to its homology in database was mentioned.
  2. (a)no successful sequence of qnrA could be obtained although its amplicon was sent twice to different laboratories.
  3. (b)at p-value ≤ 0.05 level of significance.
  4. (c)these genes gave negative results with profile number 1 isolate.
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