Figure 2
CMP tables. Representative CMP tables are shown from one of the samples in this study. (A) The 54 most abundant CMPs in the sample. The CMPs are numbered consecutively (first column on left) based on frequency (abundance; number of pixels) shown in last column. The TIS software automatically assigns the first marker as marker #0 and the most abundant CMP as number “0”. Note that column 0 (for marker 0) contains a mixture of 0s and 1s depending on the absence or presence of that marker in each CMP. Intervening columns show whether each of the markers is present (1) or absent (0) in each CMP. All of the CMPs with a “1” for marker 2 are marked with an arrow. (B) A similar table in which only CMPs containing marker 2 are shown. Note that for column 2 all entries show a “1”, indicating the presence of marker 2. Also, note that the CMP numbers are no longer consecutive, but list the 54 most abundant CMPs containing that marker. The first 19 CMPs are marked with an arrow and correspond to the CMPs marked with arrows in (A). Similar marker-specific tables were generated for each marker. Tables like this have been described previously29,30.
