Table 8 Four DNA methylation types, their degrees and modified mixed scoring approach.
From: Exploring japonica rice epigenetic diversity in the main production regions of Heilongjiang Province
Types | Methylation status | Methylation status | Banding pattern (EcoR I/Hpa II)/(EcoR I/Msp I) | Methylation degree | Mixed scoring (Subepiloci) | |||
|---|---|---|---|---|---|---|---|---|
I | II | III | IV | |||||
I | Non methylation | 5’CCGG GGCC5’ | 1/1 | 0 | 1 | 0 | 0 | 0 |
II | Full and hemi-methylation of internal cytosine | 5’CmCGG GGCmC5 5’CmCGG G GCC5’ | 0/1 | 1 | 0 | 1 | 0 | 0 |
III | Hemi-methylation of external cytosine | 5’mCCGG GGCC5’ | 1/0 | 1 | 0 | 0 | 1 | 0 |
IV | Full and hemi-methylation of both cytosines Mutation(unknown) Full methylation of external cytosine | 5’mCmCGG GGCmCm5’ 5’CCTG GGNC5’ 5’mCCGG GGCCm5’ | 0/0 | 2 | 0 | 0 | 0 | 1 |
