Table 3 Repeated measures statistical analysis over time at genus level.

Taxa	Week P. bonferroni	Week FDR p-value	Week coefficient
Week 1 and Week 4
Staphylococcus	0.0000012	< 0.001	−2.9
Bacillus	0.0018	< 0.001	−2.2
Gemella	0.0038	< 0.001	−2.2
Anaerococcus	0.031	< 0.01	−1.6
Bifidobacterium	0.033	< 0.01	1.9
Haemophilus	0.038	< 0.01	−2.3
Lactobacillus	0.1	< 0.05	1.6
Sphingobacterium	0.36	< 0.05	1.4
Week 4 and Week 8
Blastocatella	1.9E−12	< 0.001	−3.6
Nocardioides	2E−10	< 0.001	−3.3
Elizabethkingia	0.0000066	< 0.001	2.5
Bifidobacterium	0.00068	< 0.001	−3.1
Listeria	0.014	< 0.01	−1.9
Sphingomonas	0.11	< 0.05	−1.6
Week 8 and Week 24
Flavobacterium	2.2E−16	< 0.001	9.3
Pseudaminobacter	7.8E−13	< 0.001	7.8
Mesorhizobium	3.3E−11	< 0.001	7.6
Arthrobacter	1E−10	< 0.001	6.6
Brevundimonas	1.4E−10	< 0.001	7.7
Microbacterium	1.6E−09	< 0.001	6.9
Rhodoglobus	8.4E−09	< 0.001	6
Psychrobacter	6.4E−08	< 0.001	6.1
Granulicatella	0.0000014	< 0.001	−5.2
Bifidobacterium	0.0000061	< 0.001	−3.1
Chryseobacterium	0.000015	< 0.001	4.8
Sphingobacterium	0.000055	< 0.001	4.2
EscherichiaShigella	0.00022	< 0.001	−3.8
Pseudomonas	0.0011	< 0.001	3.6
Acinetobacter	0.0015	< 0.001	3.7
Faecalibacterium	0.0063	< 0.001	−2.1
Stenotrophomonas	0.0071	< 0.001	−3.1
Actinomyces	0.0082	< 0.001	−3
Rhodococcus	0.0096	< 0.001	3.4
Rothia	0.031	< 0.01	−2.9
Blautia	0.048	< 0.01	−1.6
Bacteroides	0.26	< 0.05	−1.4
Veillonella	0.28	< 0.05	−2.2
Subdoligranulum	0.32	< 0.05	−1.3

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