Figure 6
From: Vero cells gain renal tubule markers in low-calcium and magnesium chemically defined media
(a) HPA tissue related gene set enrichment analysis of Sus_CDM2 samples compared to Adh_CDM2 samples (FDR < 0.05). Tissue profiles were developed with the package TissueEnrich. Only tissue enriched genes were selected for the profiles, and only profiles with size of at least 5 specific genes were considered for the analysis. The proportion of the genes related to that profile and contributing to the enrichment scores are annotated at the side of the bars. The coloring of the bars depicts the FDR values according to the legend on the right side of the figure. (b) MD plot of identified kidney enriched genes with LFC and log(CPM) values. Green and red labels renal tubules or kidney associated genes according to Human Protein Atlas database, respectively. (c) Identification of renal tubule segment specific expression pattern. Segment related gene set enrichment analysis of Sus_CDM2 samples compared to Adh_CDM2 samples (FDR < 0.1).
