Table 2 Summary results of the DAPC model on the complete dataset.

From: Admixture and breed traceability in European indigenous pig breeds and wild boar using genome-wide SNP data

Replicate

Assignment success, %

nPCs

VarPCs, %

rep1

0.983

100

0.524

rep2

0.988

200

0.646

rep3

0.975

100

0.525

rep4

0.979

200

0.649

rep5

0.992

100

0.526

rep6

0.988

100

0.526

rep7

0.996

250

0.695

rep8

0.967

200

0.649

rep9

0.992

200

0.646

rep10

0.975

250

0.694

  1. nPCs = number of principal components selected for the DAPC model; VarPCs = percentage of original variance explained by the selected principal components. The total number of pigs was 1,186, the number of pigs in the TRN set was 944, and the number of pigs in the validation set was 242.
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