Table 3 Validated transcriptome-based analysis.

From: Selection of RNA-based evaluation methods for tumor microenvironment by comparing with histochemical and flow cytometric analyses in gastric cancer

Category

Selected bulk RNA-Seq analysis

(1) Immune cell estimation

1_CIBERSORTx (absolute)_T cells CD8

2_Bindea_Treg

3_MCP-counter_B lineage

(2) Infiltration and function

4_TIDE_Exclusion

5_TIDE_Dysfunction

(3) Proliferation

6_ssGSEA_REACTOME_DNA_REPLICATION

(4) Tumor cell death

7_ssGSEA_GOBP_NECROPTOTIC_SIGNALING_PATHWAY

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