Table 2 Enriched GO BioProcess terms associated with DEG in soybean 14A leaf tissues. All terms are statistically overrepresented by ≥ fivefold (FDR-corrected p ≤ 0.05).
From: Constitutive expression of a pea apyrase, psNTP9, increases seed yield in field-grown soybean
GO ID | GO BioProcess description | Genome GO count | Expressed GO count | Expected GO count | Fold over-represented |
|---|---|---|---|---|---|
Up-regulated genes (753) | |||||
Mitochondrial protein import | |||||
GO:0045039 | Protein import into mitochondrial inner membrane | 19 | 6 | 0.350 | 17.2 |
GO:0006626 | Protein targeting to mitochondrion | 235 | 22 | 4.327 | 5.1 |
Fatty acid and wax biosynthesis, cuticle development | |||||
GO:0000036 | ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 29 | 8 | 0.440 | 18.2 |
GO:0010025 | Wax biosynthetic process | 59 | 7 | 1.086 | 6.4 |
GO:0042335 | Cuticle development | 131 | 12 | 2.412 | 5.0 |
Protein synthesis | |||||
GO:0006412 | Translation | 763 | 261 | 14.048 | 18.6 |
GO:0006414 | Translational elongation | 81 | 23 | 1.491 | 15.4 |
RNA processing, ribosome biogenesis | |||||
GO:0030515 | snoRNA binding | 8 | 5 | 0.121 | 41.2 |
GO:0042274 | Ribosomal small subunit biogenesis | 19 | 14 | 0.350 | 40.0 |
GO:0008097 | 5S rRNA binding | 11 | 5 | 0.167 | 30.0 |
GO:0003735 | Structural constituent of ribosome | 733 | 271 | 11.114 | 24.4 |
GO:0042254 | Ribosome biogenesis | 264 | 103 | 4.861 | 21.2 |
GO:0000462 | Maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 13 | 5 | 0.239 | 20.9 |
GO:0001510 | RNA methylation | 418 | 159 | 7.696 | 20.7 |
GO:0006407 | rRNA export from nucleus | 11 | 4 | 0.203 | 19.8 |
GO:0019843 | rRNA binding | 44 | 7 | 0.667 | 10.5 |
Down-regulated genes (243) | |||||
Regulation of cell division | |||||
GO:0042127 | Regulation of cell proliferation | 108 | 14 | 1.240 | 11.3 |
GO:0010389 | Regulation of G2/M transition of mitotic cell cycle | 155 | 15 | 1.780 | 8.4 |
GO:0000910 | Cytokinesis | 92 | 7 | 1.056 | 6.6 |
GO:0000911 | Cytokinesis by cell plate formation | 471 | 28 | 5.409 | 5.2 |
Microtubule motor activity, cytoskeleton organization | |||||
GO:0003777 | Microtubule motor activity | 184 | 25 | 1.522 | 16.4 |
GO:0007018 | Microtubule-based movement | 184 | 21 | 2.113 | 9.9 |
GO:0051225 | Spindle assembly | 98 | 8 | 1.125 | 7.1 |
Epidermal cell, stomatal complex development | |||||
GO:0010374 | Stomatal complex development | 44 | 7 | 0.505 | 13.9 |
GO:0009957 | Epidermal cell fate specification | 33 | 5 | 0.379 | 13.2 |
Epigenetic regulation of gene expression | |||||
GO:0016458 | Gene silencing | 156 | 15 | 1.791 | 8.4 |
GO:0016572 | Histone phosphorylation | 159 | 12 | 1.826 | 6.6 |
GO:0034968 | Histone lysine methylation | 258 | 15 | 2.963 | 5.1 |
Regulation of DNA replication and transcription | |||||
GO:0006275 | Regulation of DNA replication | 255 | 20 | 2.928 | 6.8 |
GO:0006270 | DNA replication initiation | 159 | 11 | 1.826 | 6.0 |
