Table 1 Data on patient characteristics, sample types, symptoms at collection, clades, and number of mutations found in the SARS-CoV-2 genomes isolated from COVID-19 patients.
Patient (age/sex) | Sample type | Symptoms at sample collection | Symptom severity | Clade/lineage | Mutations | ||
|---|---|---|---|---|---|---|---|
GISAID | Nextstrain | Nucleotide | Amino acid | ||||
M/46 | Nasopharynx | Coughing, chills | Mild to moderate | V | 19A | 7 | 5 |
M/30 | Nasopharynx | Coughing, sore throat, chills | Mild to moderate | 5 | 4 | ||
Sputum | 4 | 3 | |||||
M/30 | Sputum | Febrile sensation | Mild to moderate | 5 | 3 | ||
Nasopharynx | 5 | 3 | |||||
F/29 | Nasopharynx | Sore throat, myalgia, chills | Mild to moderate | 6 | 3 | ||
Nasopharynx | 5 | 3 | |||||
Sputum | 6 | 3 | |||||
Nasopharynx | 5 | 3 | |||||
Nasopharynx | 6 | 3 | |||||
Nasopharynx | 6 | 4 | |||||
M/68 | Nasopharynx | Febrile sensation, chills, fever | Mild to moderate | GH | 20C | 12 | 6 |
F/53 | Nasopharynx | Myalgia, fever | Mild to moderate | 12 | 7 | ||
F/81 | Nasopharynx | Coughing, rhinorrhea | Mild to moderate | 16 | 11 | ||
M/68 | Sputum | Chills, fever | Severe | 20 | 13 | ||
M/76 | Sputum | Fever, cough, dizziness, chills | Mild to moderate | 14 | 8 | ||
M/74 | Sputum | Cough, phlegm | Mild to moderate | 21 | 9 | ||
F/51 | Sputum | Sore throat | Mild to moderate | 20 | 8 | ||
F/37 | Nasopharynx | Asymptomatic | Asymptomatic | 24 | 15 | ||
M/83 | Nasopharynx | Hypotension, low oxygen saturation | Critical/fatal | 19 | 7 | ||
Nasopharynx | 19 | 7 | |||||
Cell supernatant | 20 | 9 | |||||
Cell supernatant | 20 | 8 | |||||
Plasma | 20A | 17 | 9 | ||||
Nasopharynx | 20C | 17 | 7 | ||||
Sputum | 17 | 9 | |||||
M/82 | Nasopharynx | Fever | Mild to moderate | 22 | 12 | ||
Nasopharynx | 22 | 12 | |||||
F/93 | Cell supernatant, nasopharynx | Myalgia | Mild to moderate | 15 | 10 | ||
F/66 | Cell supernatant, sputum | Dyspnea | Mild to moderate | 22 | 10 | ||
F/78 | Cell supernatant, sputum | Sore throat, myalgia, chills | Mild to moderate | GH | 20C | 22 | 9 |
F/87 | Cell supernatant, nasopharynx | Hypotension, low oxygen saturation | Critical/fatal | 20 | 7 | ||
