Table 2 Example lncRNAs annotated in Araport11.
Annotated lncRNAs | Araport11 annotation | Araport11 gene IDs | Other lncRNAs databases | Biological role | Biological condition | Experimental validation |
|---|---|---|---|---|---|---|
IPS1 | Protein-coding | AT3G09922 | GreeNC, EVLncRNAs and PNRD | Phosphate homeostasis | Phosphate deficiency | |
At4 | Protein-coding | AT5G03545 | GreeNC, EVLncRNAs and PNRD | Phosphate homeostasis | Phosphate deficiency | |
APOLO | Protein-coding | AT2G34655 | GreeNC, EVLncRNAs and PNRD | Auxin-controlled development | Auxin | |
HID1 | snoRNA | AT2G35747 | EVLncRNAs | Photomorphogenesis | Continuous red light | |
DRIR | Other RNA | AT1G21529 | NONCODE (NONATHT000172.1), PNRD (NONATHT000172) and EVLncRNAs | Stomatal closure | Drought, salinity and ABA | |
ELENA1 | Other RNA | AT4G16355 | GreeNC and CANTATAdb, NONCODE (NONATHT002899.1.1) | Defense | Pseudomonas syringae pv.tomato DC3000 | |
TAS1a | Other RNA | AT2G27400 | GreeNC | Acclimation and freezing tolerance | Cold | |
MARS | Novel transcribed region | AT5G00580 | – | Germination | Response to ABA | |
BLIL1 | NAT | AT1G26218 | CANTATAdb, GreeNC and NONCODE (NONATHT000092.1) | Photomorphogenesis | Blue light | |
COOLAIR | NAT | AT5G01675 | EVLncRNAs and CANTATAdb | Flowering time | Cold | |
FLORE | NAT | AT1G69572 | CANTATAdb, GreeNC and NONCODE (NONATHT000834.1.1) | Circadian rhythms | Long days, short day and 12 h light/12 h dark | |
FLINC | lincRNA | AT1G08103 | PlncDB (ID = ncrna9858) | Flowering time | At 16 °C |
