Figure 6

Manhattan plots for SNP significantly associated with color (A, D) and stripe pattern (B, C) phenotypes in four chromosome 13 subregions of C. edule based on the Mixed Linear Model (MLM). Y-axis represents − log 10 (p-value) of the association with each SNP and X-axis its physical position in bp. Codes of genes mined in those regions are shown with underlined bars representing their length in Mb; yellow and red dots highlight associated SNPs with stripe and color, respectively; red bars at each plot show the most interesting candidates in the subregion.