Table 3 Results of associations of the FZD6 gene with egg production traits.

From: Whole-genome sequencing identifies potential candidate genes for egg production traits in laying ducks (Anas platyrhynchos)

Trait	SNP	BP	A1	TEST	NMISS	BETA	STAT	P value
EP17	A1547351G	1,547,351	G	ADD	328	0.52	2.98	2.77 × 10^–2
EP17	C1553982G	1,553,982	G	ADD	327	− 0.57	− 2.84	2.77 × 10^–2
EP17	A1547887T	1,547,887	T	ADD	329	0.50	2.84	2.77 × 10^–2
EP17	G1546616A	1,546,616	A	ADD	326	0.50	2.80	2.77 × 10^–2
EP17	C1548761T	1,548,761	T	ADD	327	0.49	2.77	2.77 × 10^–2
EP17	T1551159C	1,551,159	C	ADD	326	− 0.55	− 2.76	2.77 × 10^–2
EP17	T1554298C	1,554,298	C	ADD	320	− 0.44	− 2.70	2.77 × 10^–2
EP17	A1546400G	1,546,400	G	ADD	326	0.47	2.68	2.77 × 10^–2
EP17	C1546217T	1,546,217	T	ADD	326	0.48	2.66	2.77 × 10^–2
EP17	A1546196T	1,546,196	T	ADD	329	0.48	2.63	2.77 × 10^–2
EP17	A1546176G	1,546,176	G	ADD	327	0.47	2.61	2.77 × 10^–2
EP17	C1548016T	1,548,016	T	ADD	327	0.47	2.61	2.77 × 10^–2
EP17	A1553775G	1,553,775	A	ADD	329	− 0.42	− 2.49	3.54 × 10^–2
EP17	T1554192C	1,554,192	C	ADD	327	− 0.41	− 2.44	3.85 × 10^–2
EP17	T1570377C	1,570,377	C	ADD	327	0.43	2.40	3.98 × 10^–2
EP17	C1567012T	1,567,012	T	ADD	329	0.42	2.37	3.98 × 10^–2
EP17	G1564507A	1,564,507	A	ADD	309	0.42	2.35	3.98 × 10^–2
EP17	A1567491G	1,567,491	G	ADD	321	0.39	2.28	4.42 × 10^–2
EP17	C1558458T	1,558,458	T	ADD	327	− 0.44	− 2.26	4.42 × 10^–2
EP17	G1553772A	1,553,772	G	ADD	311	− 0.42	− 2.25	4.42 × 10^–2
EP17	G1571845C	1,571,845	C	ADD	327	0.35	2.21	4.66 × 10^–2
EP18	C1553982G	1,553,982	G	ADD	327	− 1.12	− 3.36	1.95 × 10^–2
EP18	T1551159C	1,551,159	C	ADD	326	− 1.10	− 3.29	1.95 × 10^–2
EP18	C1558458T	1,558,458	T	ADD	327	− 0.94	− 2.87	3.60 × 10^–2
EP18	C1546217T	1,546,217	T	ADD	326	0.83	2.73	3.60 × 10^–2
EP18	T1554298C	1,554,298	C	ADD	320	− 0.75	− 2.70	3.60 × 10^–2
EP18	A1546196T	1,546,196	T	ADD	329	0.82	2.68	3.60 × 10^–2
EP18	A1546176G	1,546,176	G	ADD	327	0.81	2.66	3.60 × 10^–2
EP18	C1548016T	1,548,016	T	ADD	327	0.81	2.66	3.60 × 10^–2
EP18	A1562579G	1,562,579	G	ADD	328	− 0.84	− 2.56	4.22 × 10^–2
EP18	A1571291G	1,571,291	G	ADD	329	− 0.81	− 2.49	4.64 × 10^–2
EP19	C1553982G	1,553,982	G	ADD	327	− 1.68	− 3.83	3.54 × 10^–3
EP19	T1551159C	1,551,159	C	ADD	326	− 1.65	− 3.76	3.54 × 10^–3
EP19	C1558458T	1,558,458	T	ADD	327	− 1.40	− 3.25	1.50 × 10^–2
EP19	T1554298C	1,554,298	C	ADD	320	− 1.14	− 3.12	1.73 × 10^–2
EP19	A1562579G	1,562,579	G	ADD	328	− 1.29	− 2.99	2.09 × 10^–2
EP19	A1571291G	1,571,291	G	ADD	329	− 1.23	− 2.88	2.48 × 10^–2
EP19	A1553775G	1,553,775	A	ADD	329	− 1.00	− 2.73	3.34 × 10^–2
EP19	T1554192C	1,554,192	C	ADD	327	− 0.99	− 2.68	3.44 × 10^–2
EP19	C1546217T	1,546,217	T	ADD	326	1.01	2.51	3.98 × 10^–2
EP19	G1572493C	1,572,493	C	ADD	327	− 1.00	− 2.50	3.98 × 10^–2
EP19	A1546196T	1,546,196	T	ADD	329	0.98	2.45	3.98 × 10^–2
EP19	A1546176G	1,546,176	G	ADD	327	0.98	2.43	3.98 × 10^–2
EP19	C1548016T	1,548,016	T	ADD	327	0.98	2.43	3.98 × 10^–2
EP19	G1553772A	1,553,772	G	ADD	311	− 0.99	− 2.42	3.98 × 10^–2
EP19	G1567392C	1,567,392	C	ADD	329	− 0.91	− 2.35	4.49 × 10^–2
EP19	C1558820T	1,558,820	T	ADD	328	− 0.85	− 2.29	4.70 × 10^–2
EP19	C1570687T	1,570,687	C	ADD	329	− 0.85	− 2.29	4.70 × 10^–2
EW59	C1558458T	1,558,458	T	ADD	327	− 102.40	− 4.67	9.21 × 10^–5
EW59	C1553982G	1,553,982	G	ADD	327	− 102.20	− 4.56	9.21 × 10^–5
EW59	T1551159C	1,551,159	C	ADD	326	− 102.20	− 4.54	9.21 × 10^–5
EW59	A1562579G	1,562,579	G	ADD	328	− 93.75	− 4.30	2.02 × 10^–4
EW59	A1571291G	1,571,291	G	ADD	329	− 89.86	− 4.13	3.26 × 10^–4
EW59	A1553775G	1,553,775	A	ADD	329	− 73.10	− 3.91	5.41 × 10^–4
EW59	T1554192C	1,554,192	C	ADD	327	− 73.30	− 3.90	5.41 × 10^–4
EW59	C1570687T	1,570,687	C	ADD	329	− 72.77	− 3.87	5.41 × 10^–4
EW59	T1554298C	1,554,298	C	ADD	320	− 70.05	− 3.83	5.41 × 10^–4
EW59	C1558820T	1,558,820	T	ADD	328	− 71.79	− 3.83	5.41 × 10^–4
EW59	A1570698G	1,570,698	A	ADD	320	− 70.92	− 3.76	6.06 × 10^–4
EW59	G1553772A	1,553,772	G	ADD	311	− 77.48	− 3.75	6.06 × 10^–4
EW59	G1558943A	1,558,943	A	ADD	328	− 69.39	− 3.73	6.06 × 10^–4
EW59	G1572493C	1,572,493	C	ADD	327	− 59.82	− 2.95	8.65 × 10^–3
EW59	G1571845C	1,571,845	C	ADD	327	47.65	2.65	1.98 × 10^–2
EW59	G1567392C	1,567,392	C	ADD	329	− 51.25	− 2.61	2.09 × 10^–2

A1, tested allele (minor allele); ADD, additive effects of SNPs, for the additive effects of SNPs, the direction of the regression coefficient represents the effect of each extra minor allele (a positive regression coefficient means that the minor allele increases traits mean).
BETA regression coefficient, STAT coefficient t-statistic, N number of non-missing individuals included in analysis, P value asymptotic P value for t-statistic after FDR correction.

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Table 3 Results of associations of the FZD6 gene with egg production traits.

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