Table 2 Putative regulators of A/S biosynthesis in Lithospermum officinale.

From: Dynamics of alkannin/shikonin biosynthesis in response to jasmonate and salicylic acid in Lithospermum officinale

TF

Gene name

Homolog

Functional annotation

log2FC*

FDR**

References

ERF113

Leryth_015351

At5g13330

Abiotic stress

1.26/1.19

8.20E−05/1.63E−06

34

ILR3

Leryth_018029

At5g54680

Metal homeostasis

0.56/0.54

2.38E−06/5.05E−09

35

MTB3

Leryth_018651

Solyc06g083980

JA-signalling

4.1/3.94

2.65E−06/5.98E−11

36

bHLH25

Leryth_024227

At4g37850

Plant defence

1.05/1.02

3.57E−08/1.148E−14

37

bHLH37

Leryth_015611

At3g50330

Plant defence

2.16/2.01

1.50E−5/1.09E−07

37

MYB4

Leryth_011527

PhMYB4

Benzenoids biosynthesis

2.36/2.25

3.30E−06/1.50E−10

38

MYB1

Leryth_008670

LeMYB1

A/S biosynthesis

2.68/2.61

2.32E−08/5.00E−18

20

MYC2

Leryth_004691

Solyc08g076930

Glycoalkaloid biosynthesis JA-signalling

1.85/1.81

1.03E−05/5.49E−09

39,40

WRKY40

Leryth_006033

MdWRKY40

Anthocyanin biosynthesis

1.63/1.52

2.22E−04/4.77E−06

41

TCP4

Leryth_009997

At3g15030

JA biosynthesis and several BP

1.64/1.41

4.06E−03/9.55E−05

42

DF1

Leryth_017332

At1g76880

Suppress root hair growth

0.3/0.28

1.03E−02/7.22E−03

43

JAZ1

Leryth_002343

At1g19180

JA-signalling

2.65/2.44

1.38E−04/4.65E−07

44

JAZ2

Leryth_010203

At1g74950

JA-signalling

2.31/2.24

8.55E−08/2.05E−15

44

JAZ1

Leryth_010265

At1g19180

JA-signalling

2.07/2

2.41E−06/6.98E−11

44

JAZ3

Leryth_011523

At3g17860

JA-signalling

0.73/0.69

1.48E−04/9.4E−06

44

JAZ10

Leryth_017232

At5g13220

JA-signalling

1.5/1.39

1.21E−04/1.96E−06

44

  1. Transcription factors (TFs) coexpressed with LePGT1 in the red subnetwork. TFs which have been previously demonstrated to regulate SM biosynthesis in other plant species are highlighted in bold.
  2. *log2FC = log2 fold change, values above and below the/are from edgeR and DESeq2, respectively.
  3. **FDR = False discovery rate, values above and below the/are from edgeR and DESeq2, respectively.