Table 2 The number of transcripts sharing protein family domains with the bacterial koreenceine biosynthesis pathway.

From: De novo transcriptome assembly of Conium maculatum L. to identify candidate genes for coniine biosynthesis

The bacterial gene involved in Koreenceine synthesis

Function predicted by Lozano et al.20

PFAM id

PFAM description

Number of Conium maculatum transcripts sharing PFAM domain

kecF

Pyridoxalphosphate-dependent aminotransferase

PF00202

Aminotransferase class-III

81

kecG

Ketoreductase

PF00106

Short-chain dehydrogenase

436

kecG

Ketoreductase

PF08659

KR domain

14

kecG

Ketoreductase

PF13561

Enoyl-(Acyl carrier protein) reductase

331

kecH

NAD(P)H oxidoreductase

PF00106

Short-chain dehydrogenase

436

kecH

NAD(P)H oxidoreductase

PF08659

KR domain

14

kecH

NAD(P)H oxidoreductase

PF13561

Enoyl-(Acyl carrier protein) reductase

331

  1. As the plant pathway uses PKS type III, unlike the bacterial pathway, we have excluded the PKS genes and included only the polyketide accessory genes and transaminase in our analyses when comparing the bacterial genes with C. maculatum transcripts.
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