Table 1 Lineage and number of cases (N) distributed per year of each IS6110-cluster.
Cluster | Lineage | N | 2004 | 2005 | 2006 | 2007 | 2008 | 2009 | 2010 | 2011 | 2012 | 2013 | 2014 | 2015 | 2016 | 2017 | 2018 | 2019 | 2020 | SNPs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CLS_2 | 4.1.2.1 | 29 | 3 | 5 | 2 | 7 | 5 | 1 | 1 | 1 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | > 90 |
CLS_5 | 4.4.1.1 | 16 | 2 | 2 | 0 | 5 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 2 | 0 | ≤ 5 |
CLS_7* | 4.8 | 178 | 34 | 14 | 18 | 22 | 20 | 9 | 12 | 11 | 5 | 4 | 7 | 8 | 3 | 3 | 5 | 2 | 1 | < 12 |
CLS_8 | 4.3.4.1 | 19 | 6 | 2 | 2 | 3 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | < 5 |
CLS_9 | 4.3.3 | 15 | 3 | 3 | 1 | 2 | 2 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 14–35 |
CLS_13 | 4.8 | 20 | 6 | 6 | 2 | 1 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | ≤ 5 |
CLS_14 | 4.1.2.1 | 42 | 2 | 13 | 2 | 4 | 7 | 3 | 3 | 1 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | < 12 |
CLS_15 | 4.1.2.1 | 12 | 2 | 6 | 1 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | > 90 |
CLS_19 | 4.9 | 13 | 1 | 5 | 0 | 1 | 1 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | ≤ 5 |
CLS_21 | 4.8 | 35 | 0 | 4 | 3 | 8 | 0 | 0 | 6 | 1 | 1 | 5 | 2 | 2 | 1 | 0 | 1 | 0 | 1 | ≤ 5 |
CLS_24 | 4.3.2 | 39 | 8 | 9 | 1 | 3 | 0 | 4 | 1 | 1 | 3 | 1 | 1 | 1 | 0 | 4 | 1 | 1 | 0 | < 12 |
CLS_26 | 4.7 | 19 | 2 | 3 | 1 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 2 | 1 | 0 | 1 | 3 | 0 | 1 | > 90 |
CLS_28 | 4.8 | 13 | 0 | 4 | 1 | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 0 | 0 | ≤ 5 |
CLS_30 | 4.1.2.1 | 35 | 2 | 2 | 1 | 1 | 10 | 1 | 3 | 5 | 2 | 2 | 0 | 4 | 0 | 0 | 0 | 2 | 0 | ≤ 5 |
CLS_47 | 4.8 | 19 | 2 | 0 | 2 | 1 | 2 | 1 | 1 | 1 | 1 | 0 | 2 | 1 | 1 | 1 | 0 | 3 | 0 | 14–35 |
CLS_49 | 4.1.2.1 | 11 | 0 | 1 | 2 | 1 | 2 | 0 | 1 | 1 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | > 90 |
CLS_50* | 4.1.1.3 | 21 | 0 | 2 | 6 | 0 | 4 | 2 | 1 | 1 | 0 | 1 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | < 12 |
CLS_67 | 4.1.2.1 | 19 | 0 | 2 | 0 | 3 | 3 | 1 | 1 | 0 | 1 | 2 | 0 | 3 | 1 | 1 | 1 | 0 | 0 | ≤ 5 |
CLS_71 | 4.3.3 | 19 | 0 | 0 | 1 | 2 | 3 | 2 | 0 | 0 | 0 | 0 | 3 | 0 | 2 | 1 | 0 | 3 | 2 | < 12 |
CLS_91 | 4.1.2.1 | 12 | 0 | 1 | 0 | 0 | 2 | 0 | 3 | 3 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | < 12 |
CLS_93 | 4.8 | 14 | 0 | 0 | 0 | 0 | 3 | 2 | 1 | 0 | 0 | 2 | 0 | 0 | 1 | 2 | 0 | 3 | 0 | < 12 |
CLS_119 | 4.8 | 12 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 1 | 4 | 1 | 0 | 0 | 2 | 0 | 1 | 1 | 0 | 14–35 |
CLS_152 | 4.6.1.1 | 14 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 1 | 0 | 5 | 0 | 0 | 0 | 0 | 2 | 3 | ≤ 5 |
CLS_157 | 4.1.2 | 10 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 1 | 1 | 14–35 |
CLS_195 | 4.3.2 | 15 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 2 | 1 | 5 | 1 | 0 | 0 | 0 | ≤ 5 |
CLS_217* | 4.3.3 | 14 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 6 | 3 | 0 | 1 | 0 | ≤ 5 |
