Table 3 Mapping results for all samples captured using the different SARS-CoV-2 panels.
From: Capturing SARS-CoV-2 from patient samples with low viral abundance: a comparative analysis
Sample | Group | Twist pan-viral panel | Illumina RESV 2 panel | Arbor SARS-CoV panel | Twist SARS-CoV panel | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Reads (M) | Map (%) | BOC | DOC | Reads (M) | Map (%) | BOC | DOC | Reads (M) | Map (%) | BOC | DOC | Reads (M) | Map (%) | BOC | DOC | ||
4885 | A | 8.7 | 0.2 | 25 | 66 | 3.1 | 16 | 100 | 2E + 04 | 0.4 | 89 | 100 | 2E + 03 | 0.5 | 81.7 | 100 | 2E + 03 |
4716 | 7.4 | 0.2 | 29 | 76 | 3.1 | 25 | 100 | 3E + 04 | 0.8 | 94 | 100 | 4E + 03 | 0.7 | 83.8 | 100 | 2E + 03 | |
4660 | 3.9 | 3.3 | 33 | 506 | 4.9 | 75 | 100 | 2E + 05 | 3.5 | 94 | 100 | 1E + 04 | 2.6 | 95.0 | 100 | 9E + 03 | |
4520 | 7.7 | 1.4 | 40 | 441 | 9.0 | 43 | 100 | 2E + 05 | 2.5 | 92 | 100 | 1E + 04 | 2.2 | 89.6 | 100 | 8E + 03 | |
4707 | B | 9.5 | 0.0 | 22 | 17 | 4.9 | 4.1 | 100 | 9E + 03 | 0.8 | 80 | 100 | 3E + 03 | 0.5 | 48.4 | 100 | 932 |
4697 | 5.0 | 0.0 | 10 | 1.4 | 3.4 | 0.3 | 98 | 516 | 0.1 | 43 | 98 | 139 | 0.6 | 3.0 | 98 | 70 | |
4676 | 5.8 | 0.4 | 25 | 99 | 3.2 | 29 | 100 | 4E + 04 | 2.1 | 92 | 100 | 9E + 03 | 1.4 | 84.8 | 100 | 4E + 03 | |
4653 | 4.0 | 1.8 | 31 | 281 | 5.5 | 59 | 100 | 1E + 05 | 5.8 | 94 | 100 | 2E + 04 | 5.5 | 91.6 | 100 | 2E + 04 | |
4861 | C | 4.3 | 0.1 | 23 | 14 | 1.8 | 7.5 | 100 | 6E + 03 | 7.7 | 84 | 100 | 3E + 04 | 3.6 | 56.1 | 100 | 8E + 03 |
4787 | 4.9 | 0.0 | 4.5 | 0.2 | 2.1 | 0.1 | 53 | 51 | 0.5 | 6 | 55 | 138 | 1.0 | 1.4 | 56 | 55 | |
4688 | 19 | 0.0 | 1.4 | 0.1 | 16 | 0.0 | 26 | 17 | 0.6 | 2 | 27 | 45 | 1.7 | 0.3 | 28 | 18 | |
4673 | 2.6 | 0.0 | 6.9 | 0.9 | 1.6 | 0.4 | 93 | 249 | 0.5 | 54 | 95 | 1E + 03 | 1.5 | 5.4 | 94 | 315 | |
4777 | D | 7.8 | 0.0 | 0.0 | 0.0 | 8.5 | 0.0 | 0.0 | 0.0 | 2.2 | 0.0 | 0.0 | 0.0 | 2.1 | 0.0 | 0.3 | 0.0 |
4668 | 6.7 | 0.0 | 0.0 | 0.0 | 4.1 | 0.0 | 0.0 | 0.0 | 1.8 | 0.0 | 1.5 | 0.0 | 1.3 | 0.0 | 1.2 | 0.0 | |
4510 | – | – | – | – | – | – | – | – | – | – | – | – | 2.4 | 46.9 | 95 | 4E + 03 | |
4489 | 7.6 | 0.0 | 12 | 1.2 | 5.3 | 0.3 | 94 | 776 | 3.7 | 30 | 95 | 5E + 03 | 1.7 | 6.6 | 94 | 468 | |
4798 | E | 2.2 | 0.0 | 0.0 | 0.0 | 0.5 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 1.2 | 0.0 | 1.1 | 0.0 | 1.6 | 0.0 |
4797 | 2.6 | 0.0 | 0.0 | 0.0 | 0.9 | 0.0 | 0.0 | 0.0 | 3.9 | 0.0 | 3.6 | 0.0 | 1.4 | 0.0 | 0.9 | 0.0 | |
4656 | 1.5 | 0.0 | 0.0 | 0.0 | 0.7 | 0.0 | 0.0 | 0.0 | 1.1 | 0.0 | 0.0 | 0.0 | 2.5 | 0.0 | 0.0 | 0.0 | |
4544 | 26 | 0.0 | 0.0 | 0.0 | 22 | 0.0 | 0.0 | 0.0 | 0.4 | 0.0 | 0.0 | 0.0 | 2.7 | 0.0 | 2.7 | 0.0 | |
