Figure 2 | Scientific Reports

Figure 2

From: Identification of molecular classification and gene signature for predicting prognosis and immunotherapy response in HNSCC using cell differentiation trajectories

Figure 2

Dimensionality reduction and cell trajectory analysis based on scRNA-seq data from GSE103322. (A) PCA on the basis of scRNA-seq data. (B) p < 0.5 was used to identify 15 PCs with significant differences. (C) 4873 HNSCC cells were divided into 18 clusters, a total of 4363 marker genes were recognized using differential analysis, and the top 5% of marker genes in each cluster were visualized on the heat map by using the tSNE algorithm. (D) Pseudotime and trajectory analysis.

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