Table 1 Variant B.1.5.

From: The frequency of defective genomes in Omicron differs from that of the Alpha, Beta and Delta variants

Deletion name

Amplicon

Δ (deleted nt positions)

aa

Δ size (nts deleted)

Patients

reads Δ

Total reads

Population frequency (%)

Δ244L–246R

A73

731–736

244L–246R

Δ6

482

62,756

0.77

Δ342F–343 N

A75

1024–1027

342F–343 N

Δ4

278

86,904

0.32

Δ427D–428D

A75

1281–1284

427D–428D

Δ4

279

86,904

0.32

Δ429F–444 K

A76

1285–1329

429F–444 K

Δ45

358

55,223

0.65

Δ456F–469S

A76

1368–1407

456F–469S

Δ40

187

102,058

0.18

Δ583E–585L

A77

1748–1755

583E–585L

Δ8

172

133,318

0.13

Δ656Y–670Y

A78

1980–2020

656Y–670Y

Δ13 to Δ41

2309

126,823

1.82

Δ817F–822L

A79

2451–2466

817F–822L

Δ11 to Δ16

1318

225,275

0.59

Δ852N–856 V

A80

2566–2578

852 N–856 V

Δ13

2788

67,62

4.12

Δ1107R–1130I

A82

3319–3389

1107R–1130I

Δ71

47

10,472

0.45

Δ1224L–1232I

A83

3670–3694

1224L–1232I

Δ25

157

52,409

0.30